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Updated: Sep 9, 2025

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
EvidenceMap: Learning evidence analysis to unleash the power of small language models for biomedical question
Chang Zong1, Jian Wan1, Siliang Tang2
1Zhejiang University of Science and Technology, 318 Liuhe Road, Hangzhou, 310023, China.
Abstract:
When addressing professional questions in the biomedical domain, humans typically acquire multiple pieces of information as evidence and engage in multifaceted analysis to provide high-quality answers. Current LLM-based question answering methods lack a detailed definition and learning process for evidence analysis, leading to the risk of error propagation and hallucinations while using evidence. Although increasing the parameter size of LLMs can alleviate these issues, it also presents challenges in training and deployment with limited resources. In this study, we propose EvidenceMap, which aims to enable a lightweight pre-trained language model to explicitly learn multiple aspects of biomedical evidence, including supportive evaluation, logical correlation and content summarization, thereby latently guiding a generative model (around 3B parameters) to provide textual responses. Experimental results demonstrate that our method, learning evidence analysis by fine-tuning a model with only 66M parameters, exceeds the RAG method with an 8B LLM by 19.9% and 5.7% in reference-based quality and accuracy, respectively. The code and dataset for reproducing our framework and experiments are available at https://github.com/ZUST-BIT/EvidenceMap.
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