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Updated: Sep 9, 2025

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
Beyond black boxes: using explainable causal artificial intelligence to separate signal from noise in
Renato Ferreira-da-Silva1,2, Ricardo Cruz-Correia3, Inês Ribeiro4,3
1Porto Pharmacovigilance Centre, Faculty of Medicine of the University of Porto, Alameda Professor Hernâni Monteiro, 4200-319, Porto, Portugal. rsilva@med.up.pt.
Artificial intelligence (AI) enhances pharmacovigilance (PV) for faster safety signal detection. However, explainable and causal AI are needed to overcome black-box limitations and ensure reliable drug safety assessments.
Area of Science:
- Pharmacovigilance
- Artificial Intelligence
- Machine Learning
Background:
- Machine learning (ML) models show promise in improving pharmacovigilance (PV) tasks like case triage and signal detection.
- Current ML models often function as "black boxes," limiting transparency and trust in their decision-making processes.
- Traditional ML may perpetuate biases present in spontaneous reporting systems, such as under-reporting and missing data.
Purpose of the Study:
- To explore the potential and challenges of integrating AI into PV.
- To advocate for a transition towards causally informed and interpretable AI models in PV.
- To highlight the need for AI that enhances, rather than replaces, expert judgment in drug safety.
Main Methods:
- Review of current AI applications in PV.
- Discussion of limitations of traditional ML, including lack of explainability and bias amplification.
- Exploration of explainable AI (XAI) and causal AI as potential solutions.
Main Results:
- AI can accelerate the identification of potential drug safety issues.
- Lack of transparency and potential for bias are significant challenges with current AI in PV.
- Explainable and causal AI methods offer more interpretable and reliable outputs but require further development and validation.
Conclusions:
- A shift towards causally informed, interpretable AI models is crucial for credible and ethical PV.
- Key priorities include integrating causal inference, developing benchmark datasets, aligning outputs with clinical logic, and establishing rigorous validation.
- The goal is to enhance expert judgment with transparent and reliable AI tools for improved drug safety surveillance.
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