Related Experiment Video
Updated: Sep 9, 2025

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
Beyond black boxes: using explainable causal artificial intelligence to separate signal from noise in
Renato Ferreira-da-Silva1,2, Ricardo Cruz-Correia3, Inês Ribeiro4,3
1Porto Pharmacovigilance Centre, Faculty of Medicine of the University of Porto, Alameda Professor Hernâni Monteiro, 4200-319, Porto, Portugal. rsilva@med.up.pt.
Abstract:
Artificial intelligence (AI), particularly machine learning (ML), is increasingly influencing pharmacovigilance (PV) by improving case triage and signal detection. Several studies have reported encouraging performance, with high F1 scores and alignment with expert assessments, suggesting that AI tools can help prioritize reports and identify potential safety issues faster than manual review. However, integrating these tools into PV raises concerns. Most models are designed for prediction, not explanation, and operate as "black boxes," offering limited insight into how decisions are made. This lack of transparency may undermine trust and clinical utility, especially in a domain where causality is central. Traditional ML relies on correlational patterns and may amplify biases inherent in spontaneous reporting systems, such as under-reporting, missing data, and confounding. Recent developments in explainable AI (XAI) and causal AI aim to address these issues by offering more interpretable and causally meaningful outputs, but their use in PV remains limited. These methods face challenges, including the need for robust data, the difficulty of defining ground truth for adverse drug reactions (ADRs), and the lack of standard validation frameworks. In this commentary, we explore the promise and pitfalls of AI in PV and argue for a shift toward causally informed, interpretable models grounded in epidemiological reasoning. We identify four priorities: incorporating causal inference into AI workflows; developing benchmark datasets to support transparent evaluation; ensuring model outputs align with clinical and regulatory logic; and upholding rigorous validation standards. The goal is not to replace expert judgment, but to enhance it with tools that are more transparent, reliable, and capable of separating true signals from noise. Moving toward explainable and causally robust AI is essential to ensure that its application in pharmacovigilance is both scientifically credible and ethically sound.
More Related Videos
Related Concept Videos
Pharmacovigilance
This process, termed pharmacovigilance, aims to detect, evaluate, and minimize harmful effects related to medication use. The data collection for pharmacovigilance depends on spontaneous reporting systems, where healthcare professionals or patients voluntarily report suspected ADRs.
In some cases, there...
Types of Biopharmaceutical Studies: Controlled and Non-Controlled Approaches
Non-controlled studies, commonly employed for initial exploration, lack a control group, rendering them susceptible to biases and external influences. In contrast,...
Analysis of Population Pharmacokinetic Data
Causality in Epidemiology
Analysis Methods of Pharmacokinetic Data: Model and Model-Independent Approaches
The model approach uses mathematical models to describe changes in drug concentration over time. Pharmacokinetic models help characterize drug behavior in patients, predict drug concentration in the body fluids, calculate optimum dosage regimens, and evaluate the risk of toxicity. However, ensuring that the model fits the experimental data accurately...
Drug Discovery: Overview

