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Whole-Brain 3D Activation and Functional Connectivity Mapping in Mice using Transcranial Functional Ultrasound Imaging
Published on: February 24, 2021
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A brain-wide map of neural activity during complex behaviour.
, Dora Angelaki1, Brandon Benson2
1New York University, New York, NY, USA.
Nature
|September 3, 2025
Summary
Neuroscientists mapped brain-wide neural activity in mice during a decision-making task. This comprehensive dataset reveals how widespread neural signals integrate sensory information, choices, and actions, advancing our understanding of brain function.
Area of Science:
- Neuroscience
- Computational Neuroscience
- Systems Neuroscience
Background:
- Understanding how diverse brain regions integrate sensory information with expectations for movement and decision-making is a significant challenge.
- Inconsistent analytical approaches across different laboratories hinder progress in neuroscience research.
- A unified, large-scale dataset is needed to map brain-wide neural activity and its relation to behavior.
Purpose of the Study:
- To create a comprehensive brain-wide neural activity map using large-scale recordings.
- To analyze how neural activity in various brain regions encodes task variables during a decision-making task.
- To provide a publicly accessible resource for understanding brain computations and behavior.
Main Methods:
- Acquired large-scale neural recordings from 621,733 neurons using 699 Neuropixels probes across 139 mice in 12 laboratories.
- Data collected from mice performing a complex decision-making task involving sensory, motor, and cognitive processes.
- Probes covered 279 brain areas in the forebrain, midbrain, hindbrain, and cerebellum.
Main Results:
- Visual stimulus representations initially appeared in visual areas and subsequently spread to midbrain and hindbrain regions, encoding choices.
- Widespread neural responses correlated with impending motor actions across nearly all recorded brain areas.
- Neural responses to reward delivery and consumption were observed throughout the brain, indicating distributed processing.
Conclusions:
- The study provides a valuable brain-wide map and analysis of neural activity during decision-making.
- Neural computations related to sensory processing, choice, action, and reward are distributed across multiple brain areas.
- This publicly available dataset serves as a crucial resource for future neuroscience research into brain function and behavior.
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