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DeepSeek-R1 vs OpenAI o1 for Ophthalmic Diagnoses and Management Plans
David Mikhail1, Andrew Farah2, Jason Milad3
1Temerty Faculty of Medicine, University of Toronto, Toronto, Ontario, Canada.
JAMA Ophthalmology
|September 4, 2025
Summary
Open-weight large language models (LLMs) like DeepSeek-R1 show superior diagnostic and management accuracy in complex ophthalmology cases compared to proprietary models, while also reducing costs.
Area of Science:
- Ophthalmology
- Artificial Intelligence
- Clinical Decision Support
Background:
- Large language models (LLMs) are increasingly explored for clinical decision-making.
- Few studies have assessed LLM performance on complex ophthalmology cases from clinical practice.
- Evaluating open-weight vs. proprietary LLMs is crucial for clinical utility and accessibility.
Purpose of the Study:
- To compare the diagnostic accuracy and management decision-making of DeepSeek-R1 and OpenAI o1.
- To assess the cost-effectiveness of these LLMs in ophthalmology.
- To understand the performance of reasoning-enhanced, open-weight LLMs in complex clinical scenarios.
Main Methods:
- Cross-sectional evaluation of DeepSeek-R1 and OpenAI o1 using standardized prompts (Plan-and-Solve Plus).
- Utilized 422 complex clinical cases from JAMA Ophthalmology's Clinical Challenge articles across 10 subspecialties.
- Assessed diagnostic accuracy, next-step decision-making accuracy, and token costs.
Main Results:
- DeepSeek-R1 demonstrated higher diagnostic accuracy (70.4%) than OpenAI o1 (63.0%) (P=.02).
- DeepSeek-R1 also showed superior next-step decision accuracy (82.7%) compared to OpenAI o1 (75.8%) (P=.01).
- DeepSeek-R1 offered significantly lower costs, with savings up to 98.5%.
Conclusions:
- DeepSeek-R1 outperformed OpenAI o1 in diagnostic and management accuracy for ophthalmology cases.
- Open-weight LLMs, like DeepSeek-R1, present a cost-effective and scalable solution for clinical decision support.
- Further research is needed on safety and domain-specific adaptations for optimal clinical integration.
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