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Updated: Sep 8, 2025

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Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
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Epstein-Barr Virus-Associated Gastric Cancer: A Histopathologic Study With Comprehensive Molecular Profiling
Valentina Angerilli1, Jessica Gasparello2, Antonio Collesei3
1ULSS2 Marca Trevigiana, Surgical Pathology Unit, Treviso, Italy.
Summary
Epstein-Barr virus-associated gastric cancer (EBVaGC) is a distinct molecular subtype. EBVaGC exhibits unique genomic alterations, predictive biomarker expression, and a heightened immune microenvironment, suggesting EBV
Area of Science:
- Oncology
- Virology
- Genomics
Background:
- Epstein-Barr virus (EBV) is linked to a subset of gastric cancers (GCs).
- Understanding EBV-associated GCs (EBVaGCs) is crucial for targeted therapies.
Purpose of the Study:
- To characterize the histopathological and molecular features of EBVaGCs.
- To identify predictive biomarkers and analyze genomic/transcriptomic profiles.
Main Methods:
- In-situ hybridization for EBV confirmation.
- Immunohistochemistry for HER2, PD-L1, CLDN18, and MMR proteins.
- Next-generation sequencing (AmoyDX Master panel) for genomic and transcriptomic analysis.
Main Results:
- Carcinoma with lymphoid stroma (CLS) was the predominant histotype (69%).
- All EBVaGCs expressed high PD-L1 (CPS ≥10); 66% showed CLDN18 expression.
- PIK3CA (41%) and ARID1A (17%) were frequently altered genes; immune-related gene expression was upregulated.
Conclusions:
- EBVaGC represents a distinct molecular class with unique genomic and immune profiles.
- CLS is a distinct subgroup within EBVaGC, showing pronounced immune activation.
- EBV plays a role in early gastric tumor development.
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