Related Experiment Video
Updated: Jan 18, 2026

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
Published on: April 8, 2020
Thermodynamics of Molecular Binding and Clustering in the Atmosphere Revealed through Conventional and ML-Enhanced
Jakub Kubečka1, Yosef Knattrup1, Georg Baadsgaard Trolle1
1Aarhus University, Department of Chemistry, Langelandsgade 140, Aarhus DK 8000, Denmark.
Abstract:
Accurately modeling the binding free energies associated with molecular cluster formation is critical for understanding atmospheric new particle formation. Conventional quantum-chemistry methods, however, often struggle to describe thermodynamic contributions, particularly in systems exhibiting significant anharmonicity and configurational complexity. We employed umbrella sampling, an enhanced-sampling molecular dynamics technique, to compute Gibbs binding free energies for clusters formed from a diverse set of new particle formation precursors, including sulfuric acid, ammonia, dimethylamine, and water. By performing umbrella sampling along the evaporation coordinate, using forces computed at the semiempirical GFN1-xTB level of theory, we effectively capture entropic effects such as vibrational anharmonicities and transitions between different configurational minima, while avoiding errors from symmetry overcounting. In addition, we explored machine-learning-enhanced umbrella sampling simulations using neural network potentials trained on higher-level quantum chemistry data, demonstrating the feasibility of this approach for improving accuracy while maintaining computational efficiency. Our results show improved agreement with experimental values compared to conventional methods. We also present examples of gas-to-particle uptake processes, providing insights into cluster and aerosol-surface chemistry using first-principles approaches rather than commonly used molecular-mechanics force fields. This study demonstrates the importance of accounting for dynamics in predicting molecular binding thermodynamics in complex environments and highlights the potential of combining physics-based simulations with machine learning for reliable and scalable predictions.
More Related Videos
07:24Combustion Chemistry of Fuels: Quantitative Speciation Data Obtained from an Atmospheric High-temperature Flow Reactor with Coupled Molecular-beam Mass Spectrometer
Published on: February 19, 2018
09:53Molecular Beam Mass Spectrometry With Tunable Vacuum Ultraviolet VUV Synchrotron Radiation
Published on: October 30, 2012
Related Concept Videos
Atomic Spectroscopy: Effects of Temperature
At thermal equilibrium, the relative populations of excited and ground state atoms can be estimated using the Maxwell–Boltzmann distribution. For example, an increase in temperature...
Molecular Spectroscopy: Absorption and Emission
Real Gases: Effects of Intermolecular Forces and Molecular Volume Deriving Van der Waals Equation
Behavior of Gas Molecules: Molecular Diffusion, Mean Free Path, and Effusion
UV–Vis Spectroscopy: Molecular Electronic Transitions
¹H NMR of Conformationally Flexible Molecules: Variable-Temperature NMR