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Protocol for imaging and quantifying single-cell CDK activity levels during early mouse embryonic development by
Bechara Saykali1, Andy D Tran2, Michael J Kruhlak2
1Laboratory of Genome Integrity, CCR, NCI, NIH, Bethesda, MD, USA.
STAR Protocols
|September 9, 2025
Summary
This study presents a method to measure cyclin-dependent kinase (CDK) activity in single mouse embryo cells. The protocol enables tracking CDK activity during early development using live imaging and computational analysis.
Area of Science:
- Developmental Biology
- Cell Biology
- Molecular Biology
Background:
- Quantifying protein activity in single cells during early embryonic development is challenging.
- Cyclin-dependent kinases (CDKs) are crucial regulators of the cell cycle in pre-implantation embryos.
Purpose of the Study:
- To provide a detailed protocol for measuring cyclin-dependent kinase (CDK) activity in single cells of mouse pre-implantation embryos.
- To enable researchers to track CDK activity dynamics throughout early embryonic development.
Main Methods:
- Utilizing fluorescent-based reporters for CDK activity.
- Employing in vitro culture strategies for live imaging of mouse embryos.
- Implementing live fluorescent confocal microscopy for image acquisition.
- Developing computational workflows for cell tracking and data analysis.
Main Results:
- The protocol allows for the quantification of CDK activity at the single-cell level.
- Efficient live imaging and cell tracking strategies are described.
- A comprehensive image analysis workflow for processing and visualization is detailed.
Conclusions:
- This approach simplifies the complex task of measuring CDK activity in developing mouse embryos.
- The protocol facilitates the study of cell cycle regulation during pre-implantation development.
- This method provides valuable insights into the role of CDKs in early embryogenesis.

