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Updated: Jan 18, 2026

Whole-Brain 3D Activation and Functional Connectivity Mapping in Mice using Transcranial Functional Ultrasound Imaging
Published on: February 24, 2021
EFMouse: A toolbox to model stimulation-induced electric fields in the mouse brain.
Ruben Sanchez-Romero1, Sibel Akyuz1, Bart Krekelberg1
1Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, New Jersey, United States of America.
EFMouse is a new toolbox for modeling electric fields in mice, aiding research into non-invasive brain stimulation (NIBS) and its therapeutic potential in humans. This tool helps overcome challenges in translating animal studies to human applications.
Area of Science:
- Neuroscience
- Biomedical Engineering
- Computational Biology
Background:
- In-vivo animal models are crucial for understanding neuromodulation mechanisms of transcranial electrical stimulation (tES).
- Translating findings from animal models to human therapeutic applications of non-invasive brain stimulation (NIBS) is complex due to scale and geometric differences.
- Existing methods for modeling tES in animals have limitations in capturing specific experimental conditions.
Purpose of the Study:
- To introduce EFMouse, a computational toolbox designed to model intracranial electric fields in mice during tES.
- To enhance the design and interpretation of in-vivo tES studies in mice.
- To facilitate the development of targeted NIBS therapies for humans by improving animal model studies.
Main Methods:
- EFMouse extends previous modeling approaches to simulate electric fields in mice.
- The toolbox incorporates novel features for realistic surgical scenarios, including cranial windows and flexible electrode placement.
- It provides refined measures of electric field focality, direction homogeneity, and quantification using the Allen Mouse Brain Atlas.
Main Results:
- EFMouse enables detailed prediction of electric fields for in-vivo tES experiments in mice.
- The toolbox allows for the simulation of specific experimental setups, such as targeting the mouse visual cortex with transcranial direct current stimulation (tDCS).
- Predictions generated by EFMouse can be tested using in-vivo electrophysiological recordings.
Conclusions:
- EFMouse provides a valuable resource for planning and designing tES studies in mice.
- The toolbox aids in bridging the gap between animal research and human NIBS applications.
- EFMouse is publicly available, promoting further research in neuromodulation and brain stimulation.
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