Chimeric infective particles expand species boundaries in phage-inducible chromosomal island mobilization

Lingchen He1, Jonasz B Patkowski2, Jinlong Wang1

  • 1Department of Infectious Disease, Imperial College London, London SW7 2AZ, UK; Centre for Bacterial Resistance Biology, Imperial College London, London SW7 2AZ, UK.

Cell
|September 10, 2025
PubMed

Insights

Mobile genetic elements called capsid-forming phage-inducible chromosomal islands (cf-PICIs) spread between bacteria using novel mechanisms. These elements form their own capsids and use phage tails to transfer DNA across species.

Area of Science:

  • Microbiology
  • Molecular Biology
  • Genetics

Background:

  • Mobile genetic elements facilitate bacterial evolution and adaptation.
  • Phage satellites are genetic elements that depend on helper phages for replication and transfer.
  • The dissemination mechanisms of many mobile genetic elements remain poorly understood.

Purpose of the Study:

  • To identify and characterize the novel biological entity responsible for the widespread dissemination of capsid-forming phage-inducible chromosomal islands (cf-PICIs).
  • To elucidate the structure and formation mechanism of cf-PICIs.
  • To understand how cf-PICIs transfer genetic material across unrelated bacterial species.

Main Methods:

  • Comparative genomics to identify cf-PICIs across bacterial species.
  • Structural biology techniques to determine the structure of cf-PICIs.
  • In vitro assays to study the interaction between cf-PICIs and phage tails.
  • Microscopy to visualize cf-PCI formation and packaging.

Main Results:

  • Identical cf-PICIs are found across multiple bacterial species and genera.
  • cf-PICIs autonomously produce capsids and package their DNA, forming tailless, non-infective particles.
  • These cf-PCI capsids interact with various phage tails, forming chimeric particles for interspecies DNA transfer.
  • The structure of the tailless cf-PICIs and their capsid formation mechanism were elucidated.

Conclusions:

  • cf-PICIs utilize a unique mechanism involving self-assembled capsids and exogenous phage tails for widespread dissemination.
  • This novel transfer mechanism contributes to bacterial evolution and the emergence of new pathogens.
  • Understanding cf-PCI biology offers insights into mobile genetic element dynamics and horizontal gene transfer.

Related Concept Videos

DNA Bacteriophages01:26

DNA Bacteriophages

Bacteriophages, or phages, are viruses that specifically infect bacteria, utilizing their genetic material to hijack host cellular machinery for replication. DNA bacteriophages employ single-stranded DNA (ssDNA) or double-stranded DNA (dsDNA) genomes. These phages exhibit diverse replication strategies and host interactions, influencing their ecological roles and applications in biotechnology and medicine.ssDNA BacteriophagesssDNA phages, with their small genomes, utilize unique strategies to...
827
Lysogenic Cycle of Bacteriophages00:43

Lysogenic Cycle of Bacteriophages

In contrast to the lytic cycle, phages infecting bacteria via the lysogenic cycle do not immediately kill their host cell. Instead, they combine their genome with the host genome, allowing the bacteria to replicate the phage DNA along with the bacterial genome. The incorporated copy of the phage genome is called the prophage. Some prophages can re-activate and enter the lytic cycle. This often occurs in response to a perturbation, such as DNA damage, but can also transpire in the absence of...
67.3K
Viral Replication: Lysogenic Cycle01:16

Viral Replication: Lysogenic Cycle

The lysogenic cycle is a crucial viral replication strategy that allows bacteriophages to persist within host cells without immediately destroying them. This process is primarily observed in temperate phages, such as bacteriophage lambda (λ), which infects Escherichia coli. The cycle allows the viral genome to persist across bacterial generations while keeping host cells viable.Integration of the Viral GenomeUpon infection, bacteriophage lambda attaches to the bacterial surface and injects...
1.4K
Lytic Cycle of Bacteriophages01:30

Lytic Cycle of Bacteriophages

Bacteriophages, also known as phages, are specialized viruses that infect bacteria. A key characteristic of phages is their distinctive “head-tail” morphology. A phage begins the infection process (i.e., lytic cycle) by attaching to the outside of a bacterial cell. Attachment is accomplished via proteins in the phage tail that bind to specific receptor proteins on the outer surface of the bacterium. The tail injects the phage’s DNA genome into the bacterial cytoplasm. In the...
77.5K
Transduction01:16

Transduction

Among the three main modes of HGT—transformation, conjugation, and transduction—transduction is unique in that it is mediated by bacteriophages, or bacterial viruses.Transduction occurs in two ways. Generalized transduction occurs during the lytic cycle of a bacteriophage infection. In this process, bacteriophages infect bacterial cells, replicate within them, and ultimately cause cell lysis, releasing newly assembled virions. Occasionally, random fragments of the bacterial genome...
1.3K
Conservative Site-specific Recombination and Phase Variation02:53

Conservative Site-specific Recombination and Phase Variation

Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
6.7K