Loss-of-function mutations in PLD4 lead to systemic lupus erythematosus

Qintao Wang1, Honghao Zhu1, Xiangwei Sun1

  • 1Liangzhu Laboratory, Zhejiang University, Hangzhou, China.

Nature
|September 10, 2025
PubMed

Insights

Monogenic lupus linked to PLD4 gene mutations impairs nucleic acid breakdown, causing excessive TLR7/9 activation and type I interferon signaling. This offers new therapeutic targets for systemic lupus erythematosus (SLE).

Area of Science:

  • Genetics and Immunology
  • Molecular Biology
  • Autoimmune Diseases

Background:

  • Monogenic lupus provides critical insights into systemic lupus erythematosus (SLE) mechanisms and treatments.
  • Phospholipase D family member 4 (PLD4) has been implicated in immune regulation.

Purpose of the Study:

  • To investigate the role of PLD4 mutations in patients with SLE.
  • To elucidate the molecular mechanisms by which PLD4 dysfunction contributes to SLE pathogenesis.

Main Methods:

  • Genetic sequencing to identify PLD4 variants in SLE patients.
  • In vitro and ex vivo assays to assess PLD4 exonuclease activity.
  • Analysis of Toll-like receptor (TLR) activation and downstream signaling pathways, including type I interferon.
  • Phenotyping of Pld4-deficient mouse models for autoimmunity and immune cell populations.

Main Results:

  • Five SLE patients with recessive PLD4 mutations were identified.
  • PLD4 variants caused loss-of-function, impairing single-stranded nucleic acid exonuclease activity.
  • Mutations led to excessive TLR7 and TLR9 activation, with hyperactivated type I interferon signaling in patient dendritic cells.
  • Pld4-deficient mice exhibited autoimmunity and expansion of plasmacytoid dendritic cells and plasma cells.

Conclusions:

  • Recessive PLD4 loss-of-function mutations are a novel cause of monogenic SLE.
  • PLD4 deficiency disrupts nucleic acid metabolism, leading to aberrant TLR signaling and type I interferonopathy.
  • Targeting type I interferon, potentially with JAK inhibitors like baricitinib, may be a therapeutic strategy for PLD4-deficient SLE.

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