TopoTempNet: A High-Accuracy and Interpretable Decoding Method for fNIRS-Based Motor Imagery

Functional near-infrared spectroscopy (fNIRS) offers a safe and portable signal source for brain-computer interface (BCI) applications, particularly in motor imagery (MI) decoding. However, its low sampling rate and hemodynamic delay pose challenges for temporal modeling and dynamic brain network analysis. To address these limitations in temporal dynamics, static graph modeling, and feature fusion interpretability, we propose TopoTempNet, an innovative topology-enhanced temporal network for biomedical signal decoding. TopoTempNet integrates multi-level graph features with temporal modeling through three key innovations: (1) multi-level topological feature construction using local and global functional connectivity metrics (e.g., connection strength, density, global efficiency); (2) a graph-modulated attention mechanism combining Transformer and Bi-LSTM to dynamically model key connections; and (3) a multimodal fusion strategy uniting raw signals, graph structures, and temporal representations into a high-dimensional discriminative space. Evaluated on three public fNIRS datasets (MA, WG, UFFT), TopoTempNet achieves superior accuracy (up to 90.04% ± 3.53%) and Kappa scores compared to state-of-the-art models. The ROC curves and t-SNE visualizations confirm its excellent feature discrimination and structural clarity. Furthermore, the statistical analysis of graph features reveals the model's ability to capture task-specific functional connectivity patterns, enhancing the interpretability of decoding outcomes. TopoTempNet provides a novel pathway for building interpretable and high-performance BCI systems based on fNIRS.