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Published on: January 23, 2012
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An Optimized LIVE/DEAD Assay Coupled with Flow Cytometry for Quantifying Post-Stress Survival in Yeast Cells
Hanxi Tang1, Jessica Miller2, Bin Z He3
1Department of Biology, University of Iowa; Department of Chemical and Systems Biology, Stanford University.
Journal of Visualized Experiments : Jove
|September 15, 2025
Summary
This study presents a standardized flow cytometry protocol using LIVE/DEAD stains for quantifying yeast survival after stress. This method offers a faster, scalable alternative to Colony Forming Units (CFU) for assessing cell viability.
Area of Science:
- Microbiology
- Cell Biology
- Biotechnology
Background:
- Quantifying yeast survival is crucial in research.
- LIVE/DEAD stains with flow cytometry offer high-throughput analysis.
- Standardization is needed to ensure data quality and reproducibility.
Purpose of the Study:
- To present a standardized LIVE/DEAD staining protocol for yeast post-stress survival quantification using flow cytometry.
- To compare this method with Colony Forming Unit (CFU) assays.
- To highlight its utility in distinguishing between dead and damaged cells.
Main Methods:
- Standardized LIVE/DEAD staining with SYTO 9 and propidium iodide (PI).
- Flow cytometry analysis of treated *Candida glabrata* samples.
- Comparison of flow cytometry survival estimates with CFU results.
Main Results:
- The standardized protocol reliably quantifies yeast survival post-stress.
- Flow cytometry results were consistent with CFU for mock and lethal doses.
- At sublethal doses, the protocol indicated higher survival, reflecting earlier viability assessment than CFU.
Conclusions:
- The presented protocol is a fast, scalable, and reproducible alternative to CFU for yeast survival quantification.
- It provides complementary data to CFU by assessing viability at an earlier stage of cell death.
- This method effectively distinguishes between dead and damaged yeast cells.

