Related Experiment Video
Updated: Jan 17, 2026

Identification of Disease-related Spatial Covariance Patterns using Neuroimaging Data
Published on: June 26, 2013
Enhancing epidemic forecasting with a physics-informed spatial identity neural network
Satoki Fujita1, Tatsuya Akutsu1
1Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto, Japan.
Abstract:
Forecasting the future number of confirmed cases in each region is a critical challenge in controlling the spread of infectious diseases. Accurate predictions enable the proactive development of optimal containment strategies. Recently, deep learning-based models have increasingly leveraged graph structures to capture the spatial dynamics of epidemic spread. While intuitive, this approach often increases model complexity, and the resulting performance gains may not justify the added burden. In some cases, it may even lead to overfitting. Moreover, infectious disease data is typically noisy, making it difficult to extract infectious disease-specific dynamics from data without guidance based on epidemiological domain knowledge. To address these issues, we propose a simple yet effective hybrid model for multi-region epidemic forecasting, termed Physics-Informed Spatial IDentity neural network (PISID). This model integrates a spatio-temporal identity (STID)-based neural network module, which encodes spatio-temporal information without relying on graph structures, with an SIR module grounded in classical epidemiological dynamics. Regional characteristics are incorporated via a spatial embedding matrix, and epidemiological parameters are inferred through a fully connected neural network. These parameters are then used to govern the dynamics of the SIR model for forecasting purposes. Experiments on real-world datasets demonstrate that the proposed PISID model achieves stable and superior predictive performance compared to baseline models, with approximately 27K parameters and an average training time of 0.45 seconds per epoch. Additionally, ablation studies validate the effectiveness of the neural network's encoding architecture, and analysis of the decoded epidemiological parameters highlights the model's interpretability. Overall, PISID contributes to reliable epidemic forecasting by integrating data-driven learning with epidemiological domain knowledge.
Related Concept Videos
Steps in Outbreak Investigation
Causality in Epidemiology
Model Approaches for Pharmacokinetic Data: Distributed Parameter Models
The distributed parameter models are specifically designed to account for variations and differences in some drug classes. This model is particularly useful for assessing regional concentrations of anticancer or...
Applications of GIS: Disaster Management and Emergency Response
Design Example: Analyzing Capacity Contours for Flood Risk Assessment
Selected Data About Geographic Locations

