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Machine Learning-Based Model for Predicting Coronary Heart Disease Using Preβ HDL and Cytokines as Plasma Biomarkers
Seema Singh Saharan1, Kate Townsend Creasy2, Lauren Birnbaum3
1Department of Clinical Pharmacy, School of Pharmacy, University of California, San Francisco, United States.
Insights
Plasma Preβ High-Density Lipoprotein (HDL) and specific cytokines show high predictive accuracy for coronary heart disease (CHD) using machine learning. This discovery could lead to new diagnostic tools and therapeutic targets for CHD.
Area of Science:
- Cardiovascular Disease Research
- Biomarker Discovery
- Machine Learning in Medicine
Background:
- Coronary heart disease (CHD) is a leading global cause of mortality.
- Improved prediction and early intervention methods for CHD are crucial.
- Plasma biomarkers, including Preβ High-Density Lipoprotein (HDL) and cytokines, are being investigated for CHD risk assessment.
Purpose of the Study:
- To evaluate the predictive efficacy of plasma Preβ HDL and cytokines for CHD.
- To utilize machine learning (ML) algorithms for enhanced CHD risk prediction.
- To identify specific biomarkers that can discriminate between CHD patients and control subjects.
Main Methods:
- A case-control study involving 108 individuals (41 CHD, 67 controls).
- Analysis of 35 plasma cytokines and Preβ HDL levels.
- Application of random forest algorithms with feature engineering and synthetic data augmentation to 20,000 samples.
Main Results:
- Individuals with CHD had significantly higher plasma Preβ HDL levels compared to controls.
- A random forest model incorporating Preβ HDL and specific cytokines (FGF-Basic, MCP-1, Eotaxin, IL-10, IL-9, IL-1β) achieved 100% F1 score, accuracy, and AUROC.
- These findings highlight the strong predictive power of these biomarkers.
Conclusions:
- Plasma Preβ HDL and specific cytokines are highly effective predictors of CHD when analyzed with ML.
- Further research into these biomarkers could identify novel drug targets for CHD.
- ML methodologies enhance the potential of biomarker-based CHD risk assessment.
Abstract:
Coronary heart disease (CHD) remains the leading cause of global mortality, per the Center for Disease Control. Thus, it is important to develop novel and improved methods for CHD prediction, detection, and early intervention. Our study aims to assess the predictive efficacy of plasma Preβ High-Density Lipoprotein (HDL) and cytokines as biomarkers of CHD, utilizing machine learning (ML) algorithms to enhance risk predictions. In a case-control study, we explored the potential of 35 plasma cytokines in conjunction with Preβ HDL levels to discriminate "at risk" CHD patients from non-affected, control subjects. The dataset contains data on 108 individuals and is divided into two cohorts: 41 individuals with CHD and 67 individuals in the Control group. Leveraging random forest, coupled with feature engineering and importance techniques, the dataset underwent synthetic augmentation, yielding a total of 20,000 samples. In comparison to the Control group, individuals in the CHD group exhibited significantly higher levels of Plasma Preβ HDL, with mean values of 13.5 mg/dL apoA1 and 10.2 mg/dL apoA1 respectively (p < 0.05). The second random forest classifier incorporating: Preβ HDL, FGF-Basic, MCP-1, Eotaxin, IL-10, IL-9, IL-1β achieved a F1 score, prediction accuracy, and AUROC score of 100%. The remarkable results derived from the random forest classifiers underscore the need for further exploration into the predictive potential of Preβ HDL and plasma cytokines in the development of CHD, using ML methodologies. Further investigation may lead to the identification of novel drug targets for more effective therapeutic interventions.
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