Single-cell RNA sequencing identifies CD8Teff cell activation as a predictive biomarker in triple-negative breast

Luhui Mao1, Zebang Zhang1, Yongjian Chen2

  • 1Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Department of Medical Oncology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China.

Molecular Biomedicine
|September 19, 2025
PubMed

Insights

This study identifies CD8 effector T cells (CD8Teff) and CXCL13 as key predictors of immunotherapy success in triple-negative breast cancer (TNBC). High CD8Teff presence indicates a favorable tumor microenvironment for immune checkpoint inhibitors (ICIs).

Area of Science:

  • Immunology
  • Oncology
  • Bioinformatics

Background:

  • Triple-negative breast cancer (TNBC) immunotherapy efficacy is limited by tumor immune microenvironment heterogeneity and lack of predictive biomarkers.
  • Identifying reliable biomarkers is crucial for predicting response to immune checkpoint inhibitors (ICIs) in TNBC.

Purpose of the Study:

  • To dissect the TNBC immune landscape using single-cell RNA sequencing (scRNA-seq) and transcriptome analysis.
  • To identify CD8 effector T cells (CD8Teff) as potential predictors of ICI treatment response.
  • To investigate the role of CXCL13 and immune-metabolic pathways in TNBC immunotherapy.

Main Methods:

  • Single-cell RNA sequencing (scRNA-seq) and transcriptome analysis of TNBC tumors.
  • Immune profiling to assess CD8Teff cell enrichment and correlation with survival.
  • Analysis of cytokine expression (CXCL13) and immune cell interactions within the tumor microenvironment (TME).
  • Investigation of CD8Teff cell metabolic reprogramming.
  • Development of a pathology-based artificial intelligence model for CD8Teff recognition.

Main Results:

  • CD8Teff cells were enriched in 'hot' tumors, correlating with improved progression-free and overall survival.
  • High CXCL13 expression was identified as a marker of an immune-active TME favorable for ICI efficacy.
  • Critical interactions between CD8Teff cells and other TME components were uncovered, promoting tumor control.
  • Metabolic reprogramming pathways in CD8Teff cells from responsive tumors were highlighted.
  • An AI model for CD8Teff recognition achieved AUCs of 0.823 (training) and 0.805 (validation).

Conclusions:

  • CD8Teff cells and CXCL13 are pivotal in predicting ICI success in TNBC by influencing the TME.
  • Immune-metabolic pathways and CD8Teff functionality are critical determinants of immunotherapy response.
  • Personalized treatment strategies based on immune profiling can enhance TNBC immunotherapy efficacy.

Related Concept Videos