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Multiplexed Immunofluorescence Analysis and Quantification of Intratumoral PD-1+ Tim-3+ CD8+ T Cells
Published on: February 8, 2018
Single-cell RNA sequencing identifies CD8Teff cell activation as a predictive biomarker in triple-negative breast
Luhui Mao1, Zebang Zhang1, Yongjian Chen2
1Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Department of Medical Oncology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China.
Abstract:
Immunotherapy has emerged as a promising treatment option for triple-negative breast cancer (TNBC); however, the pronounced heterogeneity of the tumor immune microenvironment significantly hinders the prediction of therapeutic efficacy, with effective biomarkers also remaining limited. This study utilizes single-cell RNA sequencing (scRNA-seq) and transcriptome analysis to dissect the immune landscapes of TNBC, emphasizing CD8 effector T cells (CD8Teff) as potential predictors of immune checkpoint inhibitors (ICIs) treatment response. Immune profiling revealed that CD8Teff cells were predominantly enriched in "hot" tumors strongly correlating with improved progression-free and overall survival. Notably, the cytokine C-X-C Motif Chemokine Ligand 13 (CXCL13) emerged as a key regulator, with its high expression marking an immune-active tumor microenvironment favorable to ICI efficacy. Comprehensive analysis uncovered critical interactions between CD8Teff cells and other immune and stromal components, supporting the formation of an immunologically active tumor microenvironment (TME) conducive to tumor control. Additionally, metabolic reprogramming of CD8Teff cells in responsive tumors highlighted pathways that may influence ICIs efficacy. CD8Teff cells significantly influence the TME and predict ICI success in TNBC, with CXCL13 as a pivotal modulator. A pathology-based artificial intelligence model for CD8Teff recognition was developed, achieving an area under the curve (AUC) of 0.823 in the training cohort and 0.805 in the validation cohort. This study provides an in-depth characterization of the TNBC immune microenvironment, identifying CD8Teff functionality, CXCL13 signaling, and immune-metabolic pathways as critical determinants of immunotherapy success. These findings support the development of personalized treatment strategies based on immune profiling to enhance therapeutic efficacy in TNBC.
Insights
This study identifies CD8 effector T cells (CD8Teff) and CXCL13 as key predictors of immunotherapy success in triple-negative breast cancer (TNBC). High CD8Teff presence indicates a favorable tumor microenvironment for immune checkpoint inhibitors (ICIs).
Area of Science:
- Immunology
- Oncology
- Bioinformatics
Background:
- Triple-negative breast cancer (TNBC) immunotherapy efficacy is limited by tumor immune microenvironment heterogeneity and lack of predictive biomarkers.
- Identifying reliable biomarkers is crucial for predicting response to immune checkpoint inhibitors (ICIs) in TNBC.
Purpose of the Study:
- To dissect the TNBC immune landscape using single-cell RNA sequencing (scRNA-seq) and transcriptome analysis.
- To identify CD8 effector T cells (CD8Teff) as potential predictors of ICI treatment response.
- To investigate the role of CXCL13 and immune-metabolic pathways in TNBC immunotherapy.
Main Methods:
- Single-cell RNA sequencing (scRNA-seq) and transcriptome analysis of TNBC tumors.
- Immune profiling to assess CD8Teff cell enrichment and correlation with survival.
- Analysis of cytokine expression (CXCL13) and immune cell interactions within the tumor microenvironment (TME).
- Investigation of CD8Teff cell metabolic reprogramming.
- Development of a pathology-based artificial intelligence model for CD8Teff recognition.
Main Results:
- CD8Teff cells were enriched in 'hot' tumors, correlating with improved progression-free and overall survival.
- High CXCL13 expression was identified as a marker of an immune-active TME favorable for ICI efficacy.
- Critical interactions between CD8Teff cells and other TME components were uncovered, promoting tumor control.
- Metabolic reprogramming pathways in CD8Teff cells from responsive tumors were highlighted.
- An AI model for CD8Teff recognition achieved AUCs of 0.823 (training) and 0.805 (validation).
Conclusions:
- CD8Teff cells and CXCL13 are pivotal in predicting ICI success in TNBC by influencing the TME.
- Immune-metabolic pathways and CD8Teff functionality are critical determinants of immunotherapy response.
- Personalized treatment strategies based on immune profiling can enhance TNBC immunotherapy efficacy.

