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A Rapid Approach to High-Resolution Fluorescence Imaging in Semi-Thick Brain Slices
Published on: July 26, 2011
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Ultrabright chemical labeling enables rapid neural connectivity profiling in large tissue samples
Shilin Zhong1, Xiaoting Zhang2, Xinwei Gao3
1National Institute of Biological Sciences (NIBS), Beijing 102206, China.
Neuron
|September 19, 2025
Summary
We developed a new technology called LINCS (labeling individual neurons with chemical dyes and controllable sparseness) for rapid and ultrabright cell labeling. This tool enables comprehensive mapping of neuronal connections across the entire mouse brain and body.
Area of Science:
- Neuroscience
- Molecular Biology
- Biotechnology
Background:
- Mapping neuronal connections is crucial for understanding brain function.
- Existing methods face challenges in speed, specificity, and scale for whole-brain analysis.
Purpose of the Study:
- To introduce LINCS, a novel technology for efficient and sparse labeling of individual neurons.
- To enable large-scale, high-resolution mapping of neural circuits in the mouse nervous system.
Main Methods:
- Developed LINCS using engineered biotin ligase for in vivo biotinylation and monovalent streptavidin staining.
- Integrated LINCS with tissue clearing and light-sheet microscopy for whole-mount imaging.
- Employed AAV and Cas9-mediated Cre knockout for stable, sparse neuronal labeling.
Main Results:
- Achieved rapid, ultrabright, and photostable labeling of specific cell types throughout the mouse brain and body.
- Enabled profiling of long-range neuronal projections in both central and peripheral nervous systems.
- Facilitated precise morphological reconstruction of individual neurons at scale.
Conclusions:
- LINCS significantly advances the capability for large-scale neural connectivity mapping.
- This technology lowers barriers and accelerates the study of mammalian neural circuits.
- LINCS provides a powerful toolkit for anatomical and functional dissection of complex neural networks.

