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A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts
Published on: September 20, 2018
A review on knowledge and information extraction from PDF documents and storage approaches
Salvador D Atagong1,2, Henri Tonnang2,3, Kennedy Senagi1
1Data Management and Geo-Information Unit (DMMGU), International Centre of Insect Physiology and Ecology, Nairobi, Kenya.
Introduction:
Automating the extraction of information from Portable Document Format (PDF) documents represents a major advancement in information extraction, with applications in various domains such as healthcare, law, or biochemistry. However, existing solutions face challenges related to accuracy, domain adaptability, and implementation complexity.
Methods:
A systematic review of the literature was conducted using the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) methodology to examine approaches and trends in PDF information extraction and storage approaches.
Results:
The review revealed three dominant methodological categories: rule-based systems, statistical learning models, and neural network-based approaches. Key limitations include the rigidity of rule-based methods, the lack of annotated domain-specific datasets for learning-based approaches, and issues such as hallucinations in large language models.
Discussion:
To overcome these limitations, a conceptual framework is proposed comprising nine core components: project manager, document manager, document pre-processor, ontology manager, information extractor, annotation engine, question-answering tool, knowledge visualizer, and data exporter. This framework aims to improve the accuracy, adaptability, and usability of PDF information extraction systems.
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