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A Method for Targeted 16S Sequencing of Human Milk Samples
Published on: March 23, 2018
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Mapping global exposure to POPs in human milk through multivariate fingerprinting
Mike Dereviankin1, Court Sandau2, Heidelore Fiedler3
1Dereviankin Consulting Inc. Calgary, AB, Canada.
Journal of Hazardous Materials
|September 23, 2025
Summary
This study used Uniform Manifold Approximation and Projection (UMAP) to analyze persistent organic pollutants (POPs) in human milk. UMAP revealed distinct regional and economic POP fingerprints, offering new insights into global exposure patterns.
Area of Science:
- Environmental Science
- Toxicology
- Data Science
Background:
- Persistent organic pollutants (POPs) in human milk pose risks to infants.
- Traditional methods focus on POP concentrations, potentially missing compositional patterns.
Purpose of the Study:
- To apply Uniform Manifold Approximation and Projection (UMAP) for analyzing POP compositional patterns in human milk.
- To identify and compare POP 'fingerprints' across different regions, economic statuses, and time periods.
Main Methods:
- Utilized a dimensionality reduction workflow with UMAP for POP data exploration.
- Compared UMAP's effectiveness against traditional univariate, Hierarchical Cluster Analysis (HCA), and Principal Component Analysis (PCA) methods.
Main Results:
- UMAP identified detailed POP fingerprint variations undetectable by univariate methods.
- Distinct regional and economic POP fingerprints were revealed: DDT-dominant in lower-income countries, PCBs/legacy pollutants in higher-income regions.
- Temporal analysis showed POP fingerprint shifts post-2001, aligning with Stockholm Convention expansions.
Conclusions:
- UMAP effectively distinguishes compositional POP fingerprints across geospatial, temporal, and economic factors.
- This approach provides a novel comparative framework for understanding global POP exposure patterns in human milk.
Keywords:
BiomonitoringDimensionality reductionEnvironmental forensicsHuman milkPersistent organic pollutants (POPs)More Related Videos
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