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Designing Nanoparticle Surfaces with DNA Barcodes for Accurate In Vivo Quantification
Ayokunle A Lekuti1,2,3, Vanessa Y C Li1,2, Ayden Malekjahani1,2
1Institute of Biomedical Engineering, University of Toronto, 164 College Street, Toronto, Ontario M5S 3G9, Canada.
JACS Au
|September 26, 2025
Summary
Surface DNA barcoding enables nanoparticle biodistribution tracking. Strategies to reduce DNA degradation allow accurate in vivo identification and quantification of nanoparticle designs for targeted applications.
Area of Science:
- Biotechnology
- Nanotechnology
- Molecular Biology
Background:
- DNA barcoding is crucial for tracking nanoparticle biodistribution.
- Current methods using encapsulated DNA limit nanoparticle screening.
- Surface-coated DNA barcodes face degradation challenges, hindering identification and quantification.
Purpose of the Study:
- To develop strategies for reducing DNA degradation on nanoparticle surfaces.
- To enable surface-based DNA barcoding for nanoparticle biodistribution applications.
- To establish reliable in vivo identification and quantification of nanoparticle designs.
Main Methods:
- Developing strategies to minimize DNA degradation on nanoparticle surfaces.
- Investigating nanoparticle size, DNA density, and polymer characteristics.
- Utilizing chemical DNA modification and neutral polymer shielding.
- Validating surface barcoding for in vivo biodistribution assessment.
Main Results:
- Successfully reduced DNA degradation on nanoparticle surfaces.
- Identified nanoparticle size, DNA density, and polymer properties as key design parameters.
- Demonstrated effective in vivo identification and quantification of nanoparticles using surface barcodes.
- Validated the utility of surface barcoding for determining nanoparticle biodistribution.
Conclusions:
- Surface-based DNA barcoding is a viable method for nanoparticle biodistribution studies.
- Chemical modification and polymer shielding enhance DNA stability on nanoparticle surfaces.
- This approach facilitates in vivo screening of nanoparticle formulations for targeted applications.
Keywords:
DNA barcodingDNA degradationgold nanoparticlesnanoparticle barcodingnext generation sequencingsurface barcoding
