Related Experiment Video
Updated: Jan 16, 2026

Automated Robotic Liquid Handling Assembly of Modular DNA Devices
Published on: December 1, 2017
Magic Sizes Enable Minimal-Complexity High-Fidelity Assembly of Programmable Shells
Botond Tyukodi1,2,3, Fernando Caballero3, Daichi Hayakawa3
1Babeş-Bolyai University, Department of Physics, 400084 Cluj-Napoca, Romania.
Abstract:
Recent advances in synthetic methods enable designing subunits that self-assemble into structures with precise, finite sizes and well-defined architectures, but yields are frequently suppressed by the formation of off-target metastable structures. Increasing the complexity (the number of distinct subunit types) can inhibit off-target structures, but leads to slower kinetics and higher synthesis costs. Here, we study icosahedral shells formed of programmable triangular subunits as a model system, and identify design principles that produce the highest target yield at the lowest complexity. We use a symmetry-based construction to create a range of design complexities, starting from the maximal symmetry Caspar-Klug assembly up to the fully addressable, zero-symmetry assembly. Kinetic Monte Carlo simulations reveal that the most prominent defects leading to off-target assemblies are disclinations at sites of rotational symmetry. We derive symmetry-based rules for identifying the optimal (lowest complexity, highest symmetry) design that inhibits these disclinations, leading to robust high-fidelity assembly of targets with arbitrarily large, yet precise, finite sizes. The optimal complexity varies nonmonotonically with target size, with "magic" sizes appearing for high-symmetry designs in which symmetry axes do not intersect vertices of the triangular net. The optimal designs at magic sizes require 12 times fewer inequivalent interaction types than the (minimal symmetry) fully addressable construction, which greatly reduces the timescale and experimental cost required to achieve high-fidelity assembly of large targets. This symmetry-based principle for pruning off-target assembly generalizes to diverse architectures with different topologies.
Related Concept Videos
Assembly of Signaling Complexes
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
Protein Complexes with Interchangeable Parts
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
Assembly of Complex Microtubule Structures

