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Machine Learning Models to Establish the Risk of Being a Carrier of Multidrug-Resistant Bacteria upon Admission to
Sulamita Carvalho-Brugger1,2, Mar Miralbés Torner1,2, Gabriel Jiménez Jiménez1,2
1Arnau de Vilanova University Hospital, 25198 Lleida, Spain.
Abstract:
Objectives: To establish the risk of being a carrier of multidrug-resistant bacteria (MDR) upon ICU admission, according to the risk factors (RFs) from the Spanish "Resistencia Zero" (RZ) project checklist, using machine learning methodology. Methods: A retrospective cohort study, conducted with a consecutive sample of patients admitted to the ICU between 2014 and 2016. The study analyzed the RZ RFs for MDR, as well as other pathological variables and comorbidities. The study group was randomly divided into a development group (70%) and a validation group (30%). Several machine learning models were used: binary logistic regression, CHAID-type decision tree, and the XGBOOST methodology (version 2.1.0) with SHAP analysis. Results: Data from 2459 patients were analyzed, of whom 210 (8.2%) were carriers of MDR. The risk grew with the accumulation of RF. Binary logistic regression identified colonization or previous infection by MDR, prior antibiotic treatment, living in a nursing home, recent hospitalization, and renal failure as the most influential factors. The CHAID tree detected MDR in 56% of patients with previous colonization or infection, a figure that increased to almost 74% if they had also received antibiotic therapy. The XGBOOST model determined that variables related to antibiotic treatment were the most important. Conclusions: The RZ RFs have limitations in predicting MDR upon ICU admission, and machine learning models offer certain advantages. Not all RFs have the same importance, but their accumulation increases the risk. There is a group of patients with no identifiable RFs, which complicates decisions on preventive isolation.
Insights
The accumulation of risk factors (RFs) increases the likelihood of carrying multidrug-resistant bacteria (MDR) upon ICU admission, though machine learning models show advantages over traditional checklists for prediction.
Area of Science:
- Infectious Diseases
- Critical Care Medicine
- Machine Learning in Healthcare
Background:
- Multidrug-resistant bacteria (MDR) pose a significant threat in intensive care units (ICUs).
- Predicting MDR carriage upon ICU admission is crucial for effective infection control.
- The Spanish 'Resistencia Zero' (RZ) project identified several risk factors (RFs) for MDR.
Purpose of the Study:
- To evaluate the predictive performance of RZ RFs for MDR carriage upon ICU admission.
- To compare the efficacy of machine learning methodologies against traditional models for MDR risk assessment.
- To identify key predictors of MDR colonization in ICU patients.
Main Methods:
- Retrospective cohort study of 2459 patients admitted to the ICU.
- Analysis of RZ RFs, comorbidities, and pathological variables.
- Application of machine learning models: binary logistic regression, CHAID decision tree, and XGBOOST with SHAP analysis.
Main Results:
- 8.2% of patients were MDR carriers; risk increased with accumulated RFs.
- Key predictors identified by logistic regression included prior MDR infection/colonization, antibiotic use, nursing home residency, recent hospitalization, and renal failure.
- XGBOOST highlighted antibiotic treatment variables as most significant; CHAID showed MDR detection rates of 56% (prior infection/colonization) to 74% (with prior antibiotic therapy).
Conclusions:
- RZ RFs have limitations in predicting MDR carriage upon ICU admission.
- Machine learning models offer advantages in identifying and weighting MDR risk factors.
- Patient risk stratification for MDR requires considering the accumulation of RFs and acknowledging patients with no identifiable RFs.
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