Identification of High- and Low-Cadmium (Cd)-Accumulating Rice Cultivars Using Combined Molecular Markers

Rice grain is a primary dietary source of cadmium (Cd), a heavy metal toxic to humans. Reducing Cd accumulation in rice through selecting and breeding low-Cd-accumulating cultivars is very important. However, field-based screening for low-Cd rice cultivars remains labor-intensive and time-consuming. In this study, we identified molecular marker genotypes that can distinguish high- and low-Cd-accumulating rice cultivars. We developed corresponding genotypes for marker-assisted selection of low-Cd cultivars in both early and late rice varieties. Fifty-nine locally adapted, high-yielding early rice cultivars and thirty-seven locally adapted, high-yielding late rice cultivars were grown in two fields with different soil Cd levels and genotyped using molecular markers associated with grain Cd accumulation. We identified five early rice cultivars that consistently showed low Cd accumulation, with grain Cd concentrations below the food safety threshold of 0.2 mg kg^-1 across two paddy fields. For early rice, we developed two low-Cd combined molecular marker genotypes (Multi-LCL1 and Multi-LCL2) that had significantly lower grain Cd content compared to Multi-LCL3 and Multi-LCL4. For late rice, the low-Cd combined molecular marker genotype Multi-CL1 showed substantially reduced grain Cd levels relative to Multi-CL2-CL5. These findings suggest that the combined molecular marker genotypes Multi-LCL1/LCL2 for early rice and Multi-CL1 for late rice are practical tools for quickly identifying cultivars with low Cd accumulation potential.