Relaxation of Shear-Induced Orientation and Textures in Semi-Dilute DNA Solutions

Recent studies on semi-dilute Calf-Thymus DNA (CT-DNA) solutions have revealed the presence of birefringence and small-scale textures influenced by shear and ionic strength. In this study, we investigate these phenomena on the same solutions to elucidate the underlying shear-induced supramolecular organization and relaxation dynamics using rheo-birefringence, rheology, and rheo-SAXS (small-angle X-ray scattering). Static SAXS confirmed concentration-dependent inter-chain correlations in the 15-25 nm range, while rheology revealed a slipping yield-stress behavior. Oscillatory strain sweep and steady state rheo-birefringence experiments correlated the appearance of textures with the onset of flow and a stress plateau observed over a shear rate range from approximately 1 to 1000 s^-1. Transient rheo-birefringence and rheo-SAXS revealed two distinct relaxation mechanisms on well-separated time scales: a fast process lasting a few seconds, inversely proportional to the shear rate, consistent with the orientational relaxation of DNA segments on a ~20 nm scale; and a slower relaxation over tens of seconds, independent of the shear rate, associated with the disappearance of textures, and attributed to a diffusive process. These findings provide significant insights into the mechanisms governing DNA organization and dynamics in semi-dilute solutions under flow and highlight the need for temporally resolved start-up rheo-SAXS and rheo-birefringence measurements, as well as theoretical models describing these processes across various spatial and temporal scales.