Related Experiment Video
Updated: Jun 23, 2026

11:49
Using High Resolution Computed Tomography to Visualize the Three Dimensional Structure and Function of Plant Vasculature
Published on: April 5, 2013
21.6K
CLCFM3: A 3D Reconstruction Algorithm Based on Photogrammetry for High-Precision Whole Plant Sensing Using All-Around
Atsushi Hayashi1,2, Nobuo Kochi1,2,3, Kunihiro Kodama2,4
1National Agriculture and Food Research Organization, Tsukuba 305-8518, Ibaraki, Japan.
Sensors (Basel, Switzerland)
|September 27, 2025
Summary
This study introduces a new photogrammetry technique for high-density 3D plant phenotyping. The closed-loop coarse-to-fine method with multi-masked matching (CLCFM3) overcomes occlusion and errors for accurate 3D plant data.
Area of Science:
- Plant Science
- Computer Vision
- Photogrammetry
Background:
- Accurate 3D plant phenotyping is crucial for understanding plant growth.
- Plant structures with overlapping parts (leaves, stems) pose challenges for 3D reconstruction.
- Occlusion and image-matching errors lead to incomplete or inaccurate 3D point clouds.
Purpose of the Study:
- To develop a novel technique for acquiring high-density, high-precision 3D point cloud data for plant phenotyping.
- To address challenges of occlusion and erroneous points in 3D plant reconstruction.
- To enable large-scale comparative analysis of plant phenotypes using 3D information.
Main Methods:
- Proposed a closed-loop coarse-to-fine method with multi-masked matching (CLCFM3).
- CLCFM3 utilizes repeated local point cloud generation (multi-matching) to suppress occlusion.
- Employed masked matching to remove noise points and a closed-loop coarse-to-fine method (CLCFM) for accurate Structure from Motion.
Main Results:
- The CLCFM3 method effectively reconstructs high-density, high-precision 3D point clouds for complex plant structures.
- Suppression of occlusion and reduction of erroneous points were achieved.
- Improved accuracy in Structure from Motion through CLCFM enhances overall 3D data quality.
Conclusions:
- The developed photogrammetry technique enables efficient acquisition of detailed 3D plant data.
- This approach facilitates comparative analysis of plant phenotypes across various species during growth.
- The method is expected to advance plant science research through precise 3D phenotyping.

