Evolutionary Khovanov homology

Knot theory, a subfield in geometric topology, is the study of the embedding of closed circles into three-dimensional Euclidean space, motivated by the ubiquity of knots in daily life and human civilization. However, focusing on topology, the current knot theory lacks metric analysis. As a result, the application of knot theory has remained largely primitive and qualitative. Motivated by the need of quantitative knot data analysis (KDA), this work implemented the evolutionary Khovanov homology (EKH) to facilitate a multiscale KDA of real-world data. EKH considers specific metrics to filter links, capturing multiscale topological features of knot configurations beyond traditional invariants. It is demonstrated that EKH can reveal non-trivial knot invariants at appropriate scales, even when the global topological structure of a knot is simple. The proposed EKH holds great potential for KDA and machine learning applications related to knot-type data, in contrast to other data forms, such as point cloud data and data on manifolds.