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Disturbed RNA editing in MORF3-deficient Arabidopsis mitochondria leads to impaired assembly of complex I
Matthias Döring1, Hans-Peter Braun1, Nils Rugen1
1Institute of Plant Genetics, Leibniz University Hannover, Herrenhäuser Str. 2, Hannover 30419, Germany.
Abstract:
Transcripts in plant mitochondria and chloroplasts undergo editing prior to translation, with approximately 500 specific sites edited in mitochondria and about 30 in plastids of the model plant Arabidopsis (Arabidopsis thaliana). Although the full role of this mechanism is not yet understood, it is presumed to compensate for unfavorable mutations accumulated over evolutionary periods. It is also conceivable that RNA editing serves a regulatory function, as proteins can be translated from partially unedited transcripts. In this study, we characterize proteins derived from such mitochondrial transcripts. To enrich these proteins, we use an Arabidopsis multiple organellar RNA editing factor 3 (MORF3) mutant, which exhibits reduced RNA editing at numerous specific sites. Despite developmental delays, the mutant plants remain fertile. Physiological and biochemical analyses reveal that complex I of the respiratory chain is particularly affected in the mutants. Consistent with these findings, a shotgun proteomic analysis identified proteins originating from partially unedited NADH dehydrogenase subunit 2 (nad2) and nad7 transcripts. Complexome profiling revealed that these proteins integrate into the holo-complex and, to a lesser extent, into the supercomplex formed by complex I and dimeric complex III. Concurrently, known assembly intermediates of complex I are enriched in the mutant. We demonstrate that the disruption of complex I assembly is caused by the absence of editing at specific sites in transcripts encoding the subunits Nad3 and Nad4L. Our results provide deep insights into the molecular consequences of perturbations within the respiratory complex I.
Insights
Plant organelle RNA editing impacts mitochondrial complex I assembly. A MORF3 mutant showed reduced editing, affecting NADH dehydrogenase subunits and disrupting complex I function due to unedited transcripts.
Area of Science:
- Plant molecular biology
- Mitochondrial gene expression
- RNA editing mechanisms
Background:
- Plant mitochondria and chloroplasts edit transcripts before translation.
- RNA editing is crucial for gene expression, potentially compensating for mutations and regulating protein function.
- The precise roles and consequences of RNA editing, especially in mitochondrial respiration, require further investigation.
Purpose of the Study:
- To characterize proteins translated from unedited mitochondrial transcripts in Arabidopsis thaliana.
- To investigate the impact of reduced RNA editing on mitochondrial function and protein complex assembly.
- To identify specific RNA editing sites critical for the proper assembly of respiratory chain complexes.
Main Methods:
- Utilized a multiple organellar RNA editing factor 3 (MORF3) mutant exhibiting reduced RNA editing.
- Performed physiological and biochemical analyses to assess respiratory chain complex function.
- Employed shotgun proteomics and complexome profiling to identify and quantify proteins and their assembly states.
Main Results:
- The MORF3 mutant displayed developmental delays but remained fertile.
- Complex I of the respiratory chain was significantly affected in the mutant.
- Proteomic analysis identified proteins from unedited nad2 and nad7 transcripts, which integrated into complex I and supercomplexes, with enriched assembly intermediates.
Conclusions:
- Disruption of complex I assembly is linked to unedited transcripts encoding Nad3 and Nad4L subunits.
- This study provides insights into the molecular consequences of impaired RNA editing on mitochondrial respiratory complex I assembly.
- RNA editing is essential for the correct assembly and function of plant mitochondrial respiratory complexes.
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