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3D Orbital Tracking in a Modified Two-photon Microscope: An Application to the Tracking of Intracellular Vesicles
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Single molecule spectrum dynamics imaging with 3D target-locking tracking.

Hao Sha1,2, Yu Wu2,3, Yongbing Zhang4,5

  • 1School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, China.

Nature Communications
|September 30, 2025
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Summary
This summary is machine-generated.

We developed a new microscopy technique, 3D-SpecDIM, to simultaneously track biomolecule movement and spectral changes in real-time. This breakthrough enables deeper understanding of dynamic biological processes at the single-molecule level.

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Area of Science:

  • Biophysics
  • Advanced Microscopy
  • Molecular Imaging

Background:

  • Fluorescence spectra provide detailed physicochemical information about molecular environments.
  • Simultaneously imaging rapid 3D positional and spectral dynamics of single biomolecules is challenging.

Purpose of the Study:

  • To introduce a novel microscopy method, 3D-SpecDIM, for simultaneous 3D positional and spectral dynamics imaging of single biomolecules.
  • To demonstrate the capability of 3D-SpecDIM in real-time biological process imaging.

Main Methods:

  • Developed three-dimensional target-locking-based single-molecule fluorescence Spectrum Dynamics Imaging Microscopy (3D-SpecDIM).
  • Achieved high spectral accuracy, fast spectral acquisition, single-molecule sensitivity, and high 3D spatiotemporal localization precision.
  • Applied 3D-SpecDIM to image mitophagy and cellular blebbing processes.

Main Results:

  • 3D-SpecDIM successfully captured rapid 3D positional and physicochemical parameter dynamics simultaneously.
  • Demonstrated enhanced ratiometric fluorescence imaging during real-time mitophagy imaging.
  • Showcased multi-resolution imaging and quantitative imaging capabilities for cellular blebbing.

Conclusions:

  • 3D-SpecDIM is a versatile platform for concurrent multiparameter dynamics acquisition.
  • Offers comprehensive insights into biomolecular environments and interactions unattainable with conventional methods.
  • Represents a significant advancement in single-molecule spectral dynamics imaging techniques.