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CDH3-AS1 antisense RNA enhances P-cadherin translation and acts as a tumor suppressor in melanoma
Manon Chadourne1, Crystal Griffith1, Neel Jasani1
1Department of Molecular Oncology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612, USA.
Abstract:
Thousands of regulatory non-coding RNAs (ncRNAs) have been annotated, yet their roles in gene regulation and cancer progression remain unclear. Mapping the landscape of ncRNA expression during melanoma progression revealed that ncRNAs represented nearly half of the deregulated genes, with antisense RNAs (asRNAs) comprising a large portion. CDH3-AS1, the most downregulated asRNA, overlaps the CDH3 gene, which encodes P-cadherin, a key cell adhesion protein that is reduced in melanoma. Overexpression of CDH3-AS1 increased cell aggregation and reduced xenograft tumor growth, mimicking the effects of CDH3. CDH3-AS1 interacted with CDH3 mRNA, increased ribosome occupancy, and enhanced P-cadherin translation through a mechanism resembling SINEB2 sequence to up-regulate translation (SINEUP)-mediated translational control. asRNAs complementary to 5' UTRs generally increase the ribosome occupancy of their cognate mRNAs, suggesting broader translational control through this mechanism. This study revealed CDH3-AS1-mediated enhancement of P-cadherin translation as a tumor-suppressive axis in melanoma and highlighted the broader potential of asRNAs as regulators of protein translation.
Insights
Antisense RNAs (asRNAs) regulate gene expression in melanoma. CDH3-AS1, an asRNA, enhances P-cadherin translation, suppressing tumor growth and cell adhesion.
Area of Science:
- Molecular Biology
- Genomics
- Cancer Research
Background:
- Thousands of regulatory non-coding RNAs (ncRNAs) are known, but their roles in gene regulation and cancer progression are not fully understood.
- ncRNAs constitute a significant portion of deregulated genes during melanoma progression, with antisense RNAs (asRNAs) being particularly prevalent.
Purpose of the Study:
- To investigate the role of ncRNAs, specifically asRNAs, in melanoma progression.
- To elucidate the function of CDH3-AS1, a downregulated asRNA, and its impact on P-cadherin expression and melanoma development.
Main Methods:
- Expression profiling of ncRNAs during melanoma progression.
- Functional studies involving CDH3-AS1 overexpression in melanoma models.
- Analysis of CDH3-AS1 interaction with CDH3 mRNA and its effect on translation.
Main Results:
- ncRNAs comprised nearly half of deregulated genes in melanoma, with asRNAs being a major component.
- CDH3-AS1, the most downregulated asRNA, was found to interact with CDH3 mRNA, increasing ribosome occupancy and enhancing P-cadherin translation.
- Overexpression of CDH3-AS1 promoted cell aggregation and reduced tumor growth in xenografts, similar to CDH3's effects.
Conclusions:
- CDH3-AS1 acts as a tumor suppressor in melanoma by enhancing P-cadherin translation.
- asRNAs complementary to 5' UTRs can broadly regulate protein translation, suggesting a significant role in gene regulation.
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