Related Experiment Video
Updated: Jan 16, 2026

10:10
HOX Loci Focused CRISPR/sgRNA Library Screening Identifying Critical CTCF Boundaries
Published on: March 31, 2019
8.7K
Foxh1 is a locus-specific PRC2 recruiter governing germ layer silencing
Jin Cho1, Clark L Hendrickson1, Nathan Mar1
1Developmental and Cell Biology, University of California, Irvine, CA, USA.
Biorxiv : the Preprint Server for Biology
|October 3, 2025
Summary
The pioneer transcription factor Foxh1 directs Polycomb Repressive Complex 2 (PRC2) to specific genes during early development. This ensures proper gene silencing and activation for embryonic development in Xenopus.
Area of Science:
- Developmental Biology
- Epigenetics
- Molecular Biology
Background:
- Polycomb Repressive Complex 2 (PRC2) is crucial for gene regulation during embryogenesis, but its recruitment mechanisms are debated.
- A prevailing model suggests PRC2 binds chromatin intrinsically, independent of transcription factors.
Purpose of the Study:
- To investigate the role of the pioneer transcription factor Foxh1 in recruiting PRC2 to specific genomic loci during early Xenopus development.
- To elucidate the dual function of Foxh1 in gene activation and repression.
Main Methods:
- Utilized maternal Foxh1-null Xenopus embryos.
- Analyzed the recruitment of Ezh2 (PRC2 catalytic subunit) to Foxh1-bound loci.
- Assessed global H3K27me3 levels.
Main Results:
- Foxh1 directly recruits Ezh2 to its bound genomic sites.
- Loss of Foxh1 leads to impaired Ezh2 recruitment and a global decrease in H3K27me3.
- Foxh1 exhibits dual function: activating endodermal genes in endoderm and recruiting PRC2 to silence them in ectoderm.
Conclusions:
- Foxh1 acts as a critical factor in directing PRC2 localization during zygotic genome activation.
- This recruitment by Foxh1 is essential for establishing spatially coordinated epigenetic states during early embryogenesis.
- Supports a dual-function model for Foxh1 in both gene activation and repression.
Related Concept Videos
Master Transcription Regulators
7.7K
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
7.7K
Hedgehog Signaling Pathway
9.8K
The Hedgehog gene (Hh) was first discovered due to its control of the growth of disorganized, hair-like bristles phenotype in Drosophila, much like hedgehog spines. Hh plays a crucial role in the development of organs and the maintenance of homeostasis in both invertebrates and vertebrates. However, while Drosophila has only one Hh protein, mammals have multiple functional Hedgehog proteins - Sonic (Shh), Desert (Dhh), and Indian Hedgehog (Ihh). All of these homologous proteins have adapted to...
9.8K
Inheritance of Chromatin Structures
7.3K
Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
7.3K
Determination
20.8K
During embryogenesis, cells become progressively committed to different fates through a two-step process: specification followed by determination. Specification is demonstrated by removing a segment of an early embryo, “neutrally” culturing the tissue in vitro—for example, in a petri dish with simple medium—and then observing the derivatives. If the cultured region gives rise to cell types that it would normally generate in the embryo, this means that it is specified. In...
20.8K
Heterochromatin
17.8K
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
17.8K
Chromatin Modification in iPS Cells
2.1K
Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
2.1K

