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Updated: Jan 16, 2026

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
Published on: July 25, 2013
Tuning the function of de novo designed artificial Cu proteins by modulating reorganization energies
Divyansh Prakash1, Simran Sony1, Saumen Chakraborty1
1Department of Chemistry and Biochemistry, University of Mississippi, Mississippi, MS, United States.
Abstract:
Artificial metalloenzyme (ArM) design is an attractive approach for deciphering the functional determinants of native enzymes or imparting new functions. Metalloproteins with redox cofactors catalyze critical reactions enabled by optimized primary, secondary, and outer-sphere interactions that facilitate efficient electron transfer. Controlling outer-sphere interactions to tune reactivity remains a challenge. Inspired by the common coordination motifs of copper (Cu) proteins, we have designed artificial Cu proteins (ArCuPs), extensively characterized them, and demonstrated their H2O2, O2, and C-H oxidation reactivity to abiotic substrates. By selectively modifying outer-sphere solvent reorganization energy, we have shown that we can control C-H peroxidation activity. This chapter describes methods to design ArCuPs and their detailed characterization, including electrochemical C-H oxidation, and the procedures for determining reorganization energies using electrochemistry as a readily available laboratory tool.
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