Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Improving Translational Accuracy02:07

Improving Translational Accuracy

14.1K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
14.1K
Improving Translational Accuracy02:07

Improving Translational Accuracy

3.5K
3.5K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Magic Cluster Anion LaCu<sub>12</sub><sup>-</sup>: From Superatomic Electronic Structure to Spherical Aromaticity.

The journal of physical chemistry. A·2026
Same author

Synergistically Modulating the Excited States of Perovskites by Hydrogen-Bond Interactions and Mn<sup>2<b>+</b></sup> Doping for Near-Unity Orange Fluorescence and Dynamic Room-Temperature Phosphorescence.

ACS applied materials & interfaces·2026
Same author

MARCH2 mediates K27-Linked polyubiquitination of IL-2 receptor α to negatively regulate T cell proliferation.

Journal of immunology (Baltimore, Md. : 1950)·2026
Same author

Efficacy of acupuncture plus pelvic floor muscle training in postpartum urinary incontinence: a systematic review and meta-analysis.

Frontiers in medicine·2026
Same author

Reciprocal regulation of TNF receptor 1-mediated signaling and inflammatory damages by MARCH2 and USP22.

Proceedings of the National Academy of Sciences of the United States of America·2026
Same author

Shenqi Granules Enhance Recovery from Myocardial Ischemia-Reperfusion Injury by Downregulating MMP9 and ADH1C.

Pharmaceuticals (Basel, Switzerland)·2026

Related Experiment Video

Updated: Jan 15, 2026

A Protocol for Computer-Based Protein Structure and Function Prediction
16:41

A Protocol for Computer-Based Protein Structure and Function Prediction

Published on: November 3, 2011

69.7K

Enhancing SchNet-Based Structure Prediction for Doped Clusters via Transfer Learning and Fine-Tuning.

Zi-Xin Wen1, Hui-Fang Li2, Kai-Le Jiang1

  • 1College of Information Science and Engineering, Huaqiao University, Xiamen 361021, China.

The Journal of Physical Chemistry. A
|October 8, 2025
PubMed
Summary

Machine learning models predict doped silicon cluster structures efficiently. Transfer learning with the SchNet model significantly reduces data and computation needs for accurate predictions.

More Related Videos

Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
08:49

Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis

Published on: June 20, 2025

1.1K
Spatial Separation of Molecular Conformers and Clusters
10:37

Spatial Separation of Molecular Conformers and Clusters

Published on: January 9, 2014

11.7K

Related Experiment Videos

Last Updated: Jan 15, 2026

A Protocol for Computer-Based Protein Structure and Function Prediction
16:41

A Protocol for Computer-Based Protein Structure and Function Prediction

Published on: November 3, 2011

69.7K
Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
08:49

Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis

Published on: June 20, 2025

1.1K
Spatial Separation of Molecular Conformers and Clusters
10:37

Spatial Separation of Molecular Conformers and Clusters

Published on: January 9, 2014

11.7K

Area of Science:

  • Computational chemistry and materials science.
  • Application of machine learning in predicting atomic cluster structures.

Background:

  • Doped clusters' electronic and magnetic properties are tunable via heteroatoms, crucial for applications.
  • Accurate structure prediction is vital for understanding structure-property relationships in doped clusters.
  • Existing machine learning (ML) methods face challenges with data demands and model portability for heterogeneous clusters.

Purpose of the Study:

  • To develop an efficient ML method for predicting the global minimum structures of doped silicon clusters.
  • To address data and computational bottlenecks in predicting heterogeneous cluster structures.
  • To establish a standardized ML framework for doped cluster studies.

Main Methods:

  • Utilized the SchNet model, a framework suitable for physicochemical tasks.
  • Integrated transfer learning by freezing neural network layers and fine-tuning with minimal data.
  • Constructed a dataset for EuSi_n (n=3-12) clusters, with energy validation using DFT calculations.
  • Optimized the ML model for predicting the structures of EuSi_n clusters.

Main Results:

  • The transfer-learned ML model accurately predicted the global minimum structures of EuSi_n (n=3-12) clusters.
  • Achieved results consistent with traditional density functional theory calculations.
  • Reduced computational time by 54.09% and data requirements by 88.89% compared to the original SchNet model.

Conclusions:

  • The proposed method overcomes traditional bottlenecks in doped cluster calculations.
  • Demonstrated significant efficiency gains in both computation time and data requirements.
  • Provides a new paradigm for machine learning studies on doped clusters.