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Global Level Quantification of Histone Post-Translational Modifications in a 3D Cell Culture Model of Hepatic Tissue
Published on: May 5, 2022
Epigenetic Regulation of Manganese-Induced Hepatotoxicity Uncovering Histone Demethylation-Associated Gene Networks
Bing Yang1,2,3,4,5, Xiaofeng Li1,6
1College of Animal Science, Anhui Science and Technology University, Fengyang, China.
Abstract:
Excessive manganese (Mn) exposure can result in significant liver toxicity in humans and animals. Histone demethylation, a crucial epigenetic modification, is believed to play a pivotal role in liver disease progression. However, the involvement of histone demethylation-associated genes in Mn-induced hepatotoxicity remains poorly understood. This study aimed to identify these genes related to Mn exposure. We analyzed gene expression data, which included liver samples treated with manganese chloride (MnCl2) and control samples. Our analysis revealed 351 differentially expressed genes (DEGs) on Day 3 and 494 DEGs on Day 5 in livers treated with 700 mg/kg MnCl2. Notably, we identified 24 overlapping histone demethylation-associated DEGs across both time points. Biological process analysis indicated that these DEGs are linked to organ regeneration, cell proliferation, responses to xenobiotic substances and toxins, bile transport, fatty acid metabolism, and posttranscriptional regulation. Pathway analysis identified associations with IL-17 signaling, cAMP pathways, chemical carcinogenesis, and parathyroid hormone synthesis and action. Furthermore, we highlighted several histone demethylation-associated hub genes, including CDKN1A, PPARA, CYP7A1, CAV1, GDF15, and GRP, implicated in Mn-induced hepatotoxicity.
Insights
Excessive manganese exposure causes liver damage. This study identifies key histone demethylation genes involved in manganese-induced liver toxicity, offering insights into disease mechanisms and potential therapeutic targets.
Area of Science:
- Biochemistry
- Toxicology
- Epigenetics
Background:
- Excessive manganese (Mn) exposure is linked to liver toxicity.
- Histone demethylation, an epigenetic process, is implicated in liver disease.
- The specific genes involved in Mn-induced hepatotoxicity via histone demethylation are not well understood.
Purpose of the Study:
- To identify histone demethylation-associated genes differentially expressed in response to manganese exposure in the liver.
- To elucidate the biological processes and pathways affected by these genes in Mn-induced hepatotoxicity.
Main Methods:
- Analysis of gene expression data from liver samples exposed to manganese chloride (MnCl2) and control samples.
- Identification of differentially expressed genes (DEGs) at different time points (Day 3 and Day 5).
- Biological process and pathway enrichment analyses of overlapping DEGs.
Main Results:
- 351 DEGs on Day 3 and 494 DEGs on Day 5 were identified.
- 24 overlapping histone demethylation-associated DEGs were found across both time points.
- These DEGs are associated with organ regeneration, cell proliferation, detoxification, bile transport, fatty acid metabolism, and pathways like IL-17 signaling and chemical carcinogenesis.
Conclusions:
- Several histone demethylation-associated genes (e.g., CDKN1A, PPARA, CYP7A1, CAV1, GDF15, GRP) are significantly altered in Mn-induced hepatotoxicity.
- These findings provide novel insights into the epigenetic mechanisms underlying manganese toxicity in the liver.
- Identification of key genes may facilitate the development of targeted interventions for Mn-induced liver damage.
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