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Optimising hyperparameters with a tree structured Parzen estimator to improve diabetes prediction.

Raafat M Munshi1, Lammar R Munshi2, Hanen Himdi3

  • 1Department of Medical Laboratory Technology (MLT), Faculty of Applied Medical Sciences, King Abdulaziz University, Rabigh, Saudi Arabia. rmonshi@kau.edu.sa.

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Machine learning, using XGBoost, improves diabetes risk prediction from lab tests. This approach enhances accuracy in identifying high-risk patients for better health outcomes.

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DiabetesDiagnostic strategiesLaboratory parametersMachine learningOptunaRisk predictionXGBoost

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Area of Science:

  • Endocrinology and Metabolic Diseases
  • Medical Informatics
  • Computational Biology

Background:

  • Diabetes mellitus is a chronic condition impacting insulin production, necessitating early identification of high-risk individuals for effective management.
  • Traditional risk prediction models using clinical data have limitations in accuracy and broad applicability.
  • Machine learning (ML) offers potential for enhanced diagnostic strategies in diabetes risk stratification.

Purpose of the Study:

  • To develop and validate a machine learning-based diagnostic strategy for improved prediction of high-risk diabetes patients.
  • To leverage the XGBoost algorithm, optimized with Optuna, for enhanced predictive accuracy using laboratory parameters.
  • To compare the performance of the proposed ML model against conventional classification methods.

Main Methods:

  • Utilized an open-access diabetes dataset comprising patient demographics, laboratory results, and clinical outcomes.
  • Employed data preprocessing techniques including cleaning, normalization, and feature extraction using Adaptive Tree-Structured Parzen Estimator (ATPE) and XGBoost.
  • Implemented and evaluated the XGBoost algorithm for high-risk patient prediction.

Main Results:

  • The proposed XGBoost model achieved 83% accuracy, 80% precision, 78% recall, and a 78% F1 score.
  • The model demonstrated superior performance compared to traditional classification models in distinguishing high-risk patients.
  • Correlation and confusion matrix analyses confirmed the model's effectiveness in patient stratification.

Conclusions:

  • Integrating ML-based risk classification with laboratory data significantly improves predictive accuracy and patient stratification for diabetes.
  • The study highlights the potential of optimized XGBoost for clinical decision-making in diabetes risk assessment.
  • Future directions include incorporating real-time data and expanding ML applications to other diseases.