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Updated: Jul 4, 2026

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Whole-Brain 3D Activation and Functional Connectivity Mapping in Mice using Transcranial Functional Ultrasound Imaging
Published on: February 24, 2021
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A non-invasive approach to awake mouse fMRI compatible with multi-modal techniques
Sam Laxer1,2, Amr Eed1, Miranda Bellyou1
1Centre for Functional and Metabolic Mapping, Western University, London, Ontario, Canada.
Imaging Neuroscience (Cambridge, Mass.)
|October 13, 2025
Summary
A new non-invasive head restraint allows for awake mouse functional magnetic resonance imaging (fMRI) without anesthesia. This method supports neuroscience research by enabling scans in sensitive mouse models and improving translational validity.
Area of Science:
- Neuroscience
- Biomedical Engineering
Background:
- Mouse functional magnetic resonance imaging (fMRI) is crucial for neuroscience research.
- Anesthesia-free awake mouse fMRI enhances translational validity and enables complex tasks.
- Current surgical restraints are not suitable for all awake mouse fMRI applications.
Purpose of the Study:
- To develop and evaluate a novel, non-invasive head restraint for awake mouse fMRI.
- To assess the restraint's compatibility with brain stimulation and recording techniques.
- To compare the restraint's performance against conventional headpost methods.
Main Methods:
- Designed and implemented an open-source, non-invasive head restraint system.
- Evaluated mouse restraint effectiveness, fMRI data quality, and animal stress levels.
- Compared the non-invasive restraint with a traditional headpost restraint in awake mice.
Main Results:
- The non-invasive restraint effectively secured mice of various weights without anesthesia.
- Increased data acquisition compensated for higher motion-related data loss.
- Achieved comparable functional network spatial specificity to headpost restraints.
Conclusions:
- A simple, open-source head restraint facilitates awake mouse fMRI for specific research needs.
- The developed protocols support acclimation and scanning procedures for this restraint.
- This approach offers a valuable alternative for awake mouse neuroimaging studies.

