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Insights into ALG3-CDG: A case study combining glycan profiling and genetic analysis.
Rebeka Kodríková1, Zuzana Pakanová1, Maroš Krchňák1
1Center of Glycomics, Institute of Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, 841 04 Bratislava, Slovakia.
Molecular Genetics and Metabolism Reports
|October 15, 2025
Summary
This study details a rare congenital disorder of glycosylation (CDG) in a young boy. Glycan profiling and genetic analysis identified ALG3-CDG, enabling crucial early diagnosis and management strategies.
Area of Science:
- Biochemistry
- Genetics
- Metabolic Disorders
Background:
- Congenital disorders of glycosylation (CDG) are rare inherited metabolic diseases affecting protein glycosylation.
- Defects in glycosylation pathways lead to significant clinical manifestations and altered glycoprofiles.
- Early diagnosis is critical for timely intervention and improved patient outcomes.
Purpose of the Study:
- To investigate the underlying cause of complex clinical symptoms in a pediatric patient.
- To characterize the N-glycan profile and identify genetic variants associated with the disorder.
- To highlight the diagnostic utility of glycomic and genetic analyses in CDG.
Main Methods:
- LC-ESI-MS analysis of RapiFluor-labelled N-glycans from serum glycoproteins.
- Whole exome sequencing to identify genetic mutations.
- Clinical phenotyping including developmental, neurological, and cardiac assessments.
Main Results:
- The patient presented with developmental delay, epilepsy, microcephaly, dysmorphism, and cardiac abnormalities.
- N-glycan analysis revealed increased truncated mannosylated structures and decreased higher-order mannose structures.
- Compound heterozygous variants (c.165C>T and c.1060C>T) in the ALG3 gene were identified, confirming ALG3-CDG.
Conclusions:
- Glycan profiling is a valuable tool for diagnosing CDG.
- Genetic analysis, specifically whole exome sequencing, is essential for pinpointing causative variants.
- This case underscores the importance of integrated diagnostic approaches for rare metabolic disorders like ALG3-CDG.

