Related Experiment Video
Updated: Jan 15, 2026

Novel 3D/VR Interactive Environment for MD Simulations, Visualization and Analysis
Published on: December 18, 2014
A single-GPU implementation of first-principles molecular dynamics
1Department of Computer Science, University of California, Davis, California 95616, USA.
None:
We present a single-Graphics Processing Unit (GPU) implementation of First-Principles Molecular Dynamics (FPMD) using plane wave basis functions and pseudopotentials, for the NVIDIA CUDA platform. We discuss various design choices made to exploit the high memory bandwidth available on a GPU while minimizing host-device data transfers. Applications to FPMD simulations of superionic NH3, liquid water, defects in SiC and MgO, and various systems including up to 512 atoms and 4096 electrons are demonstrated on an NVIDIA A100 GPU and an NVIDIA Grace-Hopper GH200 platform. Performance benchmarks show a significant speedup compared to other GPU-enhanced implementations, enabling the efficient use of computational resources. Applications to ensemble FPMD simulations of free energy barriers of a solvated molecule and residual stress in liquid water are also presented.
More Related Videos
Related Concept Videos
Molecular Models
Equilibrium Conditions for a Particle
To understand the concept of equilibrium, let us first consider the forces acting on an object. When different forces act on an object, they can...
Fermi Level Dynamics
Electron affinity in semiconductors refers to the energy gap between the minimum of its conduction band and the vacuum level and it is a critical parameter in determining how easily a semiconductor can accept additional electrons.
The work...
Molecular Comparison of Gases, Liquids, and Solids
First Law: Particles in Two-dimensional Equilibrium
Newton's first law tells us about...
Van der Waals Equation
First, the attractive forces between molecules, which are stronger at higher densities and reduce the pressure, are considered by adding to the pressure a term equal to the square of the molar density multiplied by a positive coefficient a. Second, the volume...

