Related Experiment Video
Updated: Jan 15, 2026

Capturing Actively Produced Microbial Volatile Organic Compounds from Human-Associated Samples with Vacuum-Assisted Sorbent Extraction
Published on: June 1, 2022
Bacterial volatile organic compound specialists in the phycosphere
Vaishnavi G Padaki1, Xavier Mayali2, Peter K Weber2
1Department of Microbiology, Oregon State University, Corvallis, OR 97331, United States.
Abstract:
Labile dissolved organic carbon in the surface oceans accounts for about one-fourth of carbon produced through photosynthesis and turns over on average every 3 days, fueling one of the largest engines of microbial heterotrophic production on the planet. Volatile organic compounds are poorly constrained components of dissolved organic carbon. Here, we detected 72 m/z signals, corresponding to unique volatile organic compounds, including petroleum hydrocarbons, totaling ~18.5 nM in the culture medium of a model diatom. In five cocultures with bacteria adapted to grow with this diatom, 1-59 m/z signals were depleted. Two of the most active volatile organic compound consumers, Marinobacter and Roseibium, contained more genes encoding volatile organic compound oxidation proteins, and attached to the diatom, suggesting volatile organic compound specialism. With nanoscale secondary ion mass spectrometry and stable isotope labeling, we confirmed that Marinobacter incorporated carbon from benzene, one of the depleted m/z signals detected in the co-culture. Diatom gross carbon production increased by up to 29% in the presence of volatile organic compound consumers, indicating that volatile organic compound consumption by heterotrophic bacteria in the phycosphere-a region of rapid organic carbon oxidation that surrounds phytoplankton cells-could impact global rates of gross primary production.
Related Concept Videos
Bioremediation
Volatilization
Bacterial Phylum Verrucomicrobiota
Bacterial Phylum Cyanobacteria
Bacterial Phylum Planctomycetes
Biosynthesis in Bacteria

