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Candida tropicalis Brain Abscess Diagnosed by Metagenomic Next-generation Sequencing
Yutaka Suto1, Kazuhiro Horiba2, Yasutaka Masuda1
1Department of Neurology, Matsue Red Cross Hospital, Japan.
Internal Medicine (Tokyo, Japan)
|October 15, 2025
Summary
Metagenomic next-generation sequencing (mNGS) identified Candida tropicalis in a brain abscess. This advanced technique proved crucial for diagnosing this culture-negative central nervous system (CNS) infection when standard methods failed.
Area of Science:
- Neuroscience
- Infectious Diseases
- Genomics
Background:
- Brain abscesses can be challenging to diagnose, especially when conventional microbiological methods fail to identify the causative pathogen.
- Vasculitis-associated stroke can sometimes lead to secondary complications like brain abscesses, posing diagnostic difficulties in immunocompetent individuals.
Purpose of the Study:
- To report a case of brain abscess secondary to vasculitis-associated stroke in an HIV-negative male.
- To highlight the diagnostic utility of metagenomic next-generation sequencing (mNGS) in culture-negative central nervous system (CNS) infections.
Main Methods:
- Clinical presentation of a 59-year-old male with stroke and subsequent brain abscess.
- Conventional diagnostic methods including culture and rapid multiplex PCR were employed.
- Metagenomic next-generation sequencing (mNGS) was performed on abscess tissue obtained via craniotomy and biopsy.
Main Results:
- Conventional methods failed to identify the causative pathogen in the brain abscess.
- Metagenomic next-generation sequencing (mNGS) successfully identified Candida tropicalis as the causative agent.
- The patient was diagnosed with a brain abscess attributed to Candida tropicalis following vasculitis-associated stroke.
Conclusions:
- Metagenomic next-generation sequencing (mNGS) is a valuable tool for diagnosing challenging, culture-negative CNS infections, particularly brain abscesses.
- This case underscores the importance of advanced molecular techniques when standard microbiological investigations are inconclusive.
- Candida tropicalis can be a causative agent of brain abscesses, even in immunocompetent individuals following cerebrovascular events.

