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Updated: Jan 14, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
RNA m1A methyltransferase TRMT61A promotes colorectal tumorigenesis by enhancing ONECUT2 mRNA stability and is a
Xiaoting Zhang1,2, Na Qin1,2, Fenfen Ji2
1Department of Anaesthesia and Intensive Care and Peter Hung Pain Research Institute, The Chinese University of Hong Kong, Hong Kong, P. R. China.
Background:
The role of N1-methyladenosine (m1A) in cancer is poorly understood. Here we explored the function of RNA methyltransferase TRNA methyltransferase 61A (TRMT61A) in colorectal cancer (CRC) and its potential as a therapeutic target.
Methods:
RNA m1A levels were assessed through liquid chromatography-mass spectrometry. The expression and clinical significance of TRMT61A were investigated across five human CRC cohorts. The function of TRMT61A was elucidated using CRC cell lines, patient-derived organoids, xenografts, and transgenic mouse models. Integrated analyses of m1A-sequencing and RNA-sequencing revealed the underlying mechanisms of TRMT61A. A nanoparticle-based small interfering RNA (siRNA) delivery system and a specific inhibitor were developed to target TRMT61A. The efficacy and safety of targeting TRMT61A were assessed.
Results:
Our research revealed a consistent increase in TRMT61A expression and total RNA m1A levels within primary CRCs. High TRMT61A expression was associated with poor prognosis of CRC patients. Through CRISPR/Cas9 screenings, we identified TRMT61A as the most essential gene among m1A regulators. Furthermore, we established that TRMT61A promoted CRC tumorigenesis and progression by enhancing the mRNA stability of critical targets in an m1A-dependent manner. In particular, TRMT61A boosted the mRNA stability of one cut homeobox 2 (ONECUT2), which in turn triggered son of sevenless homolog 1 (SOS1) transcription, leading to the induction of mitogen-activated protein kinase (MAPK)/extracellular signal-regulated kinase (ERK) signaling in CRC. Notably, our study underscored the safety and substantial anti-CRC effects achievable by inhibiting TRMT61A using nanoparticle-encapsulated siTRMT61A or our newly discovered small molecule compound, pentagalloylglucose.
Conclusions:
Our study unveiled the tumor-promoting role of TRMT61A in CRC via the m1A-ONECUT2-SOS1-MAPK/ERK pathway. Targeting TRMT61A showed promise as a therapeutic strategy for treating CRC.
Insights
RNA methyltransferase TRMT61A promotes colorectal cancer (CRC) by stabilizing key mRNAs. Inhibiting TRMT61A with novel therapies offers a promising strategy for CRC treatment.
Area of Science:
- Molecular Biology
- Cancer Research
- Epigenetics
Background:
- The role of N1-methyladenosine (m1A) in cancer remains largely unexplored.
- RNA methyltransferase TRNA methyltransferase 61A (TRMT61A) is investigated for its function in colorectal cancer (CRC).
Purpose of the Study:
- To explore the function of TRMT61A in CRC.
- To evaluate TRMT61A as a potential therapeutic target for CRC.
Main Methods:
- Assessed RNA m1A levels using liquid chromatography-mass spectrometry.
- Investigated TRMT61A expression and clinical significance in five human CRC cohorts.
- Elucidated TRMT61A function using cell lines, organoids, xenografts, and mouse models.
- Performed integrated m1A-seq and RNA-seq analyses.
- Developed nanoparticle-based siRNA and small molecule inhibitor targeting TRMT61A.
Main Results:
- TRMT61A expression and total RNA m1A levels are elevated in primary CRCs, correlating with poor prognosis.
- TRMT61A is essential for CRC tumorigenesis and progression, enhancing mRNA stability of targets like ONECUT2 in an m1A-dependent manner.
- TRMT61A upregulates ONECUT2, which drives SOS1 transcription and activates the MAPK/ERK pathway in CRC.
- Inhibition of TRMT61A demonstrated significant anti-CRC effects and safety in preclinical models.
Conclusions:
- TRMT61A promotes CRC through the m1A-ONECUT2-SOS1-MAPK/ERK pathway.
- Targeting TRMT61A presents a promising therapeutic strategy for colorectal cancer.
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