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Bacteriophage Mu contamination impacts interbacterial competition
Kat Pick1, Valeria Tsviklist1, Lauren Stadel1
1Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.
Abstract:
Here, we report the identification of bacteriophage Mu contamination in a commonly used Citrobacter rodentium DBS100 ∆cpxRA mutant strain. After re-constructing a new Mu-free ∆cpxRA strain, we independently replicated the results of a recent study by A. Gilliland, C. Gavino, S. Gruenheid, and T. Raivio (Infect Immun 90:e00314-22, 2022, https://doi.org/10.1128/iai.00314-22). The only result from Gilliland et al. that was impacted by the presence of Mu was the outcome of interbacterial competition assays with the ∆cpxRA strain, as strains carrying Mu consistently outcompeted susceptible Mu-free competitors. These results are important for the field, as the contaminated DBS100 ∆cpxRA mutant strain has been used in six different studies. We believe that the Mu contamination occurred during the construction of the ∆cpxRA allele, during the conjugation of DBS100 with a popular Mu-containing donor strain. Our results highlight the importance of using Mu-free conjugal donor strains and how phage contamination can impact bacterial physiology and experimental results.
Insights
Bacteriophage Mu contamination was found in a common Citrobacter rodentium mutant strain, affecting experimental results. Using a new Mu-free strain confirmed that phage presence impacts interbacterial competition assays.
Area of Science:
- Microbiology
- Bacteriology
- Virology
Background:
- The Citrobacter rodentium DBS100 ∆cpxRA mutant strain is widely used in research.
- Bacteriophage contamination can significantly alter bacterial physiology and experimental outcomes.
- Previous studies may have been impacted by undetected phage contamination.
Purpose of the Study:
- To identify and characterize bacteriophage Mu contamination in the Citrobacter rodentium DBS100 ∆cpxRA mutant.
- To re-evaluate experimental results previously obtained with the contaminated strain.
- To emphasize the importance of using phage-free strains in microbiological research.
Main Methods:
- Identification of bacteriophage Mu in the Citrobacter rodentium DBS100 ∆cpxRA strain.
- Re-construction of a Mu-free ∆cpxRA strain.
- Replication of experimental assays, including interbacterial competition, using both contaminated and Mu-free strains.
Main Results:
- Bacteriophage Mu contamination was confirmed in the commonly used DBS100 ∆cpxRA strain.
- The presence of Mu significantly impacted the outcome of interbacterial competition assays.
- Mu-contaminated strains consistently outcompeted Mu-free competitors in these assays.
Conclusions:
- The widespread use of the contaminated strain necessitates re-evaluation of previous findings.
- Phage contamination, particularly from conjugal donor strains, can confound experimental results.
- Strict quality control measures, including the use of Mu-free donor strains, are crucial for reliable microbiological research.
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