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Updated: Jan 14, 2026

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Isolation and Flow Cytometric Characterization of Murine Small Intestinal Lymphocytes
Published on: May 8, 2016
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Isolation and phenotype analysis of tissue-resident lymphocytes from mouse colon
Alessia Fiore1, Michela Tozzi2, Paola Rinzo2
1Department of Cardiovascular, Endocrine-Metabolic Diseases and Aging, Istituto Superiore di Sanità, Rome, Italy.
Methods in Cell Biology
|October 17, 2025
Summary
This study details a method to isolate and analyze immune cells in the mouse colon after exposure to pathogenic E. coli toxin. Understanding these tissue-resident immune cells is crucial for cancer research and maintaining gut homeostasis.
Area of Science:
- Immunology
- Gastroenterology
- Microbiology
Background:
- The intestinal epithelium forms a barrier between gut microbiota and the immune system.
- Bacterial toxins can disrupt this barrier, leading to inflammation, tissue damage, and potentially cancer.
- Immune cell characterization is vital for translational research in cancer prevention.
Purpose of the Study:
- To describe a protocol for isolating and analyzing tissue-resident immune cells from the mouse colon.
- To investigate immune responses following exposure to a pathogenic E. coli toxin.
Main Methods:
- Isolation of tissue-resident immune cells from mouse colon.
- Flow cytometry for phenotype analysis of immune cells.
- Repeated exposure to pathogenic E. coli toxin as a model stimulus.
Main Results:
- A detailed protocol for immune cell isolation and analysis was established.
- The protocol allows for the characterization of immune cell phenotypes in response to bacterial toxins.
- This method facilitates the study of immune system perturbations in the gut.
Conclusions:
- Characterizing tissue-resident immune cells is essential for understanding gut immune responses to bacterial toxins.
- The developed protocol provides a valuable tool for translational research in gastrointestinal diseases and carcinogenesis.
- This research contributes to understanding how bacterial components impact tissue homeostasis and immune surveillance.

