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Updated: Jan 14, 2026

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Excitation-Scanning Hyperspectral Imaging Microscopy to Efficiently Discriminate Fluorescence Signals
Published on: August 22, 2019
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High-throughput hyperspectral fluorescence imaging using a high-speed silicon photomultiplier array.
Chi Z Huang1, Vincent D Ching-Roa1, Connor M Heckman1
1Department of Biomedical Engineering, University of Rochester, 207 Goergen Hall, Box 270168, Rochester, NY 14627, USA.
Biomedical Optics Express
|October 20, 2025
Summary
This study introduces a low-cost hyperspectral detection system using silicon photomultiplier arrays for high-speed multiplex fluorescence imaging. The system achieves high spectral resolution and throughput, overcoming previous limitations in sensitivity and cost.
Area of Science:
- Biophotonics
- Microscopy
- Spectroscopy
Background:
- High-speed multiplex imaging of fluorescent probes faces limitations in spectral resolution, sensitivity, cost, and detector light throughput.
- Existing systems struggle to efficiently separate and detect spectrally overlapping fluorophores.
Purpose of the Study:
- To develop a cost-effective hyperspectral detection system for high-speed multiplex fluorescence imaging.
- To overcome the limitations of current systems by enhancing spectral resolution and light throughput.
Main Methods:
- Implementation of a hyperspectral detection system utilizing a silicon photomultiplier array.
- Integration with a conventional two-photon microscope.
- Application of a generalized spectral unmixing model for fluorophore separation.
Main Results:
- Demonstration of 16 spectral channel imaging at 50 MP/s (800M spectra/second).
- Successful extraction of spectrally overlapping fluorophores.
- Enabled multiplexing of multiple contrast agents and detection of subtle spectral shifts.
Conclusions:
- Silicon photomultiplier arrays offer a promising, low-cost solution for high-speed, high-throughput hyperspectral imaging.
- The developed system significantly advances multiplex fluorescence imaging capabilities.
- Potential for broad application in various biological and chemical sensing scenarios.

