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Online Monitoring of Chip-Based Microscale Perfusion Fermentations.

Sabrina M Cramer1,2, Shubham Gurav1,3, David Glinsner1,3

  • 1acib - austrian centre of industrial biotechnology, Muthgasse 11, Vienna 1190, Austria.

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|October 20, 2025
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Summary

A novel online analytical platform enables real-time monitoring of microbioreactor fermentations. This system allows for efficient screening and development of bioprocesses, improving strain productivity and product yield.

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Area of Science:

  • Biotechnology
  • Analytical Chemistry
  • Bioprocess Engineering

Background:

  • Conventional offline sampling in biomanufacturing provides limited feedback on fermentation parameters.
  • Bench-scale bioprocess development requires improved methods for real-time monitoring.

Purpose of the Study:

  • To develop a sensitive and selective online analytical platform for monitoring chip-based microbioreactors.
  • To enable real-time analysis of fermentation bioprocess parameters and metabolites.

Main Methods:

  • A platform was constructed using commercially available components: valves, 2DLC hardware, LC separation, and online tandem mass spectrometry.
  • Microbioreactors (20 μL) of *Saccharomyces cerevisiae* were cultivated with low-flow perfusion rates.
  • A multiplexed configuration with a stream selection valve and a microscale-adapted 2DLC-MS/MS system was employed.

Main Results:

  • The platform successfully monitored fermentations of lactic-acid-producing *S. cerevisiae* over 5-24 hours.
  • Online measurements of metabolites from parallel fermentations were achieved without blockages or cross-contamination.
  • The system demonstrated suitability for online monitoring of product quantity and key metabolites.

Conclusions:

  • The developed platform offers real-time monitoring for fermentation biotechnology, enabling rapid strain selection and screening.
  • Minimal consumption of biological material and media (<1.5 mL/24h) makes the platform highly efficient.
  • The adaptable platform can be used for monitoring diverse biomolecules and targeting other biotechnology products.