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Development, testing and comparison of novel lifestyle-based prediction models for risk of coronary heart disease
Qiaoxin Shi1,2, Haeyoon Jang1, Mengyao Wang1
1School of Public Health, The University of Hong Kong Li Ka Shing Faculty of Medicine, Pokfulam, Hong Kong SAR, China.
Insights
New models predicting coronary heart disease (CHD) risk using lifestyle behaviors and polygenic risk scores (PRS) show promise. These lifestyle-based models (LBM) offer moderate accuracy, comparable to traditional methods, and can be improved by integrating PRS.
Area of Science:
- Cardiovascular Disease Epidemiology
- Genetics and Personalized Medicine
- Digital Health and Wearable Technology
Background:
- Standard coronary heart disease (CHD) risk prediction models often rely on challenging laboratory markers.
- Advancements are needed to incorporate accessible lifestyle behaviors and genetic information for improved risk assessment.
- Existing models like Pooled Cohort Equations (PCE) and SCORE2 require enhancement for broader applicability.
Purpose of the Study:
- To develop and validate novel CHD risk prediction models using lifestyle behaviors and polygenic risk scores (PRS).
- To compare the performance of these new models against established equations (PCE and SCORE2).
- To assess the added value of integrating PRS into lifestyle-based models for CHD risk prediction.
Main Methods:
- Utilized UK Biobank data from 291,151 white British individuals.
- Developed a Lifestyle-Based Model (LBM) incorporating age, sex, BMI, diet, smoking, and wearable-derived physical activity.
- Calculated weighted PRS for CHD based on 300 genetic variants and applied Cox regression for risk prediction.
Main Results:
- The LBM, PCE, and SCORE2 showed comparable discrimination (C-index ~0.71).
- Incorporating PRS improved the C-index for LBM, PCE, and SCORE2 (up to 0.733).
- LBM demonstrated good calibration, with marginal improvement upon PRS addition, and showed a 4.30% net reclassification improvement.
Conclusions:
- A non-laboratory-based LBM integrating lifestyle and anthropometric data offers moderate CHD risk prediction accuracy.
- The addition of PRS can enhance the predictive performance of lifestyle-based models.
- Further external validation is necessary to confirm the generalizability of the developed LBM.
Abstract:
Prediction of coronary heart disease (CHD) risk through standard equations relying on laboratory-based clinical markers has proven challenging and needs advancement. This study aims to derive and cross-validate novel CHD-risk prediction models based on lifestyle behaviours including wearables and polygenic risk scores (PRS), with comparison to the established Pooled Cohort Equations (PCE) and Systematic COronary Risk Evaluation 2 (SCORE2). This study included 291,151 white British individuals of UK Biobank. Cox regression was applied to derive Lifestyle-Based Model (LBM) for CHD-risk prediction incorporating age, sex, body mass index, dietary intake score (0-3; derived from self-reported food types), smoking status, and physical activity (wearable-device-derived Euclidean Norm Minus One). Weighted PRS for CHD was calculated based on 300 genetic variants. Over a median 13.8-year follow-up, 13,063 CHD incidence cases were ascertained. The C-index (indicative of discrimination) of the LBM, PCE and SCORE2 was 0.713 (95% Confidence Interval [CI]: 0.703-0.722), 0.714 (95% CI: 0.705-0.724) and 0.709 (95% CI: 0.700-0.719). Adding PRS to LBM, PCE and SCORE2 increased the C-index to 0.733 (95% CI: 0.724-0.742), 0.726 (95% CI: 0.716-0.735) and 0.721 (95% CI: 0.711-0.730). The LBM with and without PRS both demonstrated good calibration, demonstrating by p-values of 0.997 and 0.999. The addition of PRS to LBM marginally improved calibration, with the slope increasing from 0.981 to 0.983. Integrating PRS rendered a positive categorical net reclassification improvement (cut-off point: 7.5%) of 4.30% for LBM. The non-laboratory-based LBM, integrating wearable-based and anthropometric data, demonstrated moderate cardiovascular risk prediction accuracy, though external validations remain to be explored.
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