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Updated: Jan 14, 2026

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Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
Published on: June 21, 2018
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Common Diseases in Clinical Cohorts - Not Always What They Seem
Fedik Rahimov1, Benjamin M Jacobs2,3, John S Lee1
1Genomics Research Center, AbbVie, North Chicago, IL.
The New England Journal of Medicine
|October 22, 2025
Summary
Undiagnosed rare diseases can complicate common disease diagnoses and treatments. Systematic genome sequencing helps identify these rare conditions, improving patient care and clinical trial insights.
Area of Science:
- Genomics
- Rare Diseases
- Clinical Diagnostics
Background:
- Misdiagnosis of rare diseases in patients with common conditions delays treatment.
- The impact of rare diseases on common disease diagnosis in research is understudied.
Purpose of the Study:
- To assess the incidence of monogenic rare diseases in patients diagnosed with common conditions.
- To investigate the role of rare diseases in diagnostic challenges for common diseases.
Main Methods:
- Utilized exome and genome sequencing data from UK Biobank and clinical trials.
- Analyzed participants with primary diagnoses of multiple sclerosis, inflammatory bowel disease, and atopic dermatitis.
- Combined genome and transcriptome analyses to understand treatment response.
Main Results:
- Identified 153 participants with rare variants for monogenic disorders across common disease cohorts.
- Observed a 1.12% to 2.86% incidence of rare disease variants in studied common disease populations.
- Replicated findings in independent cohorts and linked molecular diagnosis to therapeutic response.
Conclusions:
- Systematic genome sequencing is valuable for understanding disease heterogeneity and identifying undiagnosed rare diseases.
- Deep molecular phenotyping enhances clinical trials and patient care by revealing rare conditions.
- Highlights the importance of genetic analysis in complex patient cases.
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