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Published on: August 8, 2022
Clinically Actionable Hypertrophic Cardiomyopathy Genes in South Asian Indian Patients
Vinay J Rao1,2, Thiagarajan Sairam1, Andiappan Rathinavel3
1Cardiovascular Development and Disease Mechanisms Institute for Stem Cell Science and Regenerative Medicine (BRIC-inStem) Bengaluru India.
Insights
Genetic variants for hypertrophic cardiomyopathy (HCM) in South Asian Indian (SAI) patients differ from global populations. Key genes like MYBPC3, MYH7, and MYH6 show distinct prevalence patterns in SAI HCM.
Area of Science:
- Cardiovascular Genetics
- Genomics
- Precision Medicine
Background:
- Primary hypertrophic cardiomyopathy (HCM) is a genetic heart condition.
- Limited data exists on clinically actionable gene variants in South Asian Indian (SAI) populations.
- Understanding ancestry-specific variants is crucial for accurate diagnosis and treatment.
Purpose of the Study:
- To investigate the prevalence of clinically actionable gene variants in SAI patients with primary HCM.
- To compare these findings with global HCM cohorts.
- To inform genetic interpretation and reduce health disparities.
Main Methods:
- Whole-exome sequencing of 335 primary SAI patients with HCM.
- Analysis included all known cardiovascular genes and ClinGen-categorized actionable genes.
- Allele frequencies of pathogenic/likely pathogenic variants and variants of uncertain significance were determined.
Main Results:
- 193 pathogenic/likely pathogenic variants and variants of uncertain significance were found in 26 actionable genes in 35.52% of SAI HCM cases.
- SAI HCM showed significantly fewer variants in definitive category genes compared to global cohorts (15.77% vs. 43.23%).
- MYH6 exhibited a significantly higher prevalence of pathogenic/likely pathogenic variants in SAI HCM (0.897% vs. 0%).
Conclusions:
- Clinically actionable gene variants in SAI HCM patients differ significantly from other global HCM cohorts.
- Specific genes like MYBPC3, MYH7, and MYH6 demonstrate distinct patterns in the SAI population.
- These findings highlight the need for ancestry-specific genetic databases and interpretation guidelines.
Background:
Primary hypertrophic cardiomyopathy (HCM) is predominantly a genetic disease causing left ventricular hypertrophy in the absence of other cardiac and systemic metabolic diseases. Currently, limited data exist on the prevalence of clinically actionable gene variants for primary HCM in South Asian Indian (SAI) patients, which are necessary for minimizing disparities in interpreting ancestry-specific variants. The ClinGen Hereditary Cardiovascular Disorders Gene Curation Expert Panel categorized HCM-causing genes into 5 categories according to their clinical relevance: definitive, strong, moderate, limited, and disputed. However, comprehensive studies examining this classification in SAI patients are lacking.
Methods:
Whole-exome sequencing was performed for 335 primary SAI patients with HCM, including all known cardiovascular genes and clinically actionable gene categories to determine their allele frequencies.
Results:
SAI HCM exomes revealed a total of 193 pathogenic/likely pathogenic variants and variants of uncertain significance across 26 clinically actionable genes in 119 (35.52%) of 335 cases. The SAI HCM exhibited significantly fewer variants in the 12 definitive category genes compared with other global HCM cohorts (15.77% versus 43.23%; P<0.0001). For the 5 strong/moderate genes, no significant difference was observed between the SAI HCM and other global HCM cohorts (3.28% versus 2.73%; P=0.3499). Among the 21 limited and disputed genes, MYH6 showed a significantly higher prevalence of pathogenic/likely pathogenic variants in the SAI HCM than in the other global HCM cohorts (0.897% versus 0%; P=0.0287).
Conclusions:
The clinically actionable gene variants in SAI HCM differed significantly from other global HCM cohorts, specifically MYBPC3, MYH7, and MYH6.
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