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Updated: Jan 14, 2026

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Cryo-EM and Single-Particle Analysis with Scipion
Published on: May 29, 2021
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Cryo-EM single-particle analysis expanding towards increasingly native samples.
Jonas Moecking1, Tzviya Zeev-Ben-Mordehai1
1Bijvoet Centre for Biomolecular Research, Utrecht University, 3584 CG Utrecht, The Netherlands.
Acta Crystallographica. Section D, Structural Biology
|October 23, 2025
Summary
Cryo-electron microscopy single-particle analysis (SPA) is now applicable to more complex, native biological samples. Tailored preparation methods expand SPA
Area of Science:
- Structural Biology
- Biophysics
- Biochemistry
Background:
- Cryo-electron microscopy (cryo-EM) has revolutionized structural biology.
- Single-particle analysis (SPA) typically requires purified proteins.
- Cryo-electron tomography (cryo-ET) visualizes structures within cells but has resolution limits.
Purpose of the Study:
- To highlight advancements in cryo-EM single-particle analysis (SPA).
- To showcase SPA's expanding applicability to native and complex biological samples.
- To demonstrate SPA as a tool for de novo protein identification.
Main Methods:
- Review of recent studies utilizing cryo-EM SPA.
- Focus on tailored sample preparation strategies for complex assemblies.
- Comparison with cryo-focused ion beam (FIB) milling and cryo-electron tomography (cryo-ET).
Main Results:
- SPA is increasingly suitable for native and complex macromolecular assemblies.
- Tailored preparation enables SPA on previously challenging samples.
- SPA can now be used for de novo protein identification and complex stoichiometry.
Conclusions:
- Cryo-EM SPA is evolving beyond purified samples.
- Advanced sample preparation is key to analyzing native biological systems.
- SPA is a powerful tool for discovering protein complexes in their cellular context.
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