Genotyping and distribution of Giardia intestinalis assemblages in NSW, Australia

Giardiasis is the most common enteric protozoan infection notifiable in New South Wales (NSW), Australia. Surveillance by NSW Health had shown a steady increase (prior to the COVID-19 pandemic) in the number of cases reported since 2012 and the reasons for this currently remain unknown. This study aimed to investigate the occurrence of Giardia intestinalis assemblages causing human infection in NSW. Individual faecal specimens were collected from participating hospitals and private laboratories, and the presence of Giardia and co-infections was confirmed by real-time multiplex-polymerase chain reaction (PCR). Samples were genotyped by sequence analysis of the triose phosphate isomerase (tpi) gene and the small subunit rDNA. Combined genotyping showed that most samples belong to assemblage B, and only a small percentage were infected with only assemblage A. Mixtures of assemblages A and B in individuals were relatively common. Co-infections were observed in ∼ half of the cases, with the most common co-infection being Blastocystis hominis and Dientamoeba fragilis. Although giardiasis was more prevalent in males, the assemblage distribution between the sexes appeared uniform. The age distribution was bimodal, with peaks in 0-15-year-olds and in adults in their 30s. The overall largest number of cases was collected from patients aged 30-49 years. Interestingly, females aged 5 years old and under had a greater risk of assemblage B infection than their male counterparts. No significant correlation was found between assemblage and clinical symptoms. This study provides new insights into the molecular diversity of giardiasis in NSW and helps inform enhanced surveillance and prevention strategies in Sydney.