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Related Experiment Video

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An explainable three dimensional framework to uncover learning patterns: A unified look in variable sulci

Michail Mamalakis1, Héloïse de Vareilles2, Atheer Al-Manea2

  • 1Department of Psychiatry, University of Cambridge, Cambridge, UK; Department of Computer Science and Technology, Computer Laboratory, University of Cambridge, Cambridge, UK.

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|October 28, 2025
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Summary

This study introduces a 3D explainable artificial intelligence (XAI) framework for neuroimaging. It provides accurate, comprehensible 3D global explanations to understand brain structure variations linked to psychosis.

Keywords:
Brain classificationBrain patternDeep learningParacingulateSulcal patternXAI

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Area of Science:

  • Neuroimaging
  • Artificial Intelligence
  • Computational Neuroscience

Background:

  • Three-dimensional (3D) global explanations are vital in neuroimaging for interpreting complex data.
  • Existing methods often lack accuracy and comprehensibility for 3D neuroimaging data.
  • A need exists for advanced explainable AI (XAI) to provide reliable 3D global explanations.

Purpose of the Study:

  • To develop an accurate and low-complexity XAI 3D-Framework for neuroimaging.
  • To generate reliable 3D global explanations for deep learning models in neuroscience.
  • To investigate brain structure variations associated with psychosis using AI.

Main Methods:

  • Developed an XAI 3D-Framework integrating statistical features (Shape) and XAI methods (GradCam, SHAP).
  • Employed dimensionality reduction to ensure explanations reflect model learning and cohort variability.
  • Evaluated the framework on 3D deep learning models trained on 596 structural MRIs for paracingulate sulcus (PCS) detection.

Main Results:

  • The framework provides accurate, low-complexity 3D global explanations, reducing inter-method variability.
  • Identified critical sub-regions (posterior temporal, internal parietal, cingulate, thalamus) linked to PCS presence/absence.
  • Demonstrated the framework's ability to uncover developmental contexts of cortical features.

Conclusions:

  • The XAI 3D-Framework enhances the faithfulness and reliability of global explanations in neuroimaging.
  • This approach offers insights into normative brain development and atypical trajectories in mental illness.
  • Advances AI interpretability in neuroimaging for more reliable applications.